View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12809_high_1 (Length: 479)
Name: NF12809_high_1
Description: NF12809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12809_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 16 - 471
Target Start/End: Original strand, 2628578 - 2629035
Alignment:
| Q |
16 |
aaaagtcccaattttccttctctgcaggaggacatggcgccatcgtttctgggaaagctatttgatgcagcttctccttaataagtttcttcgtattgta |
115 |
Q |
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| T |
2628578 |
aaaagtcccaattttccttctctgcaggaggacatggcgccatcgtttctgggaaagctatttgatgcagctgctccttaataagtatcttcgtattgta |
2628677 |
T |
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| Q |
116 |
atcagcattgttaaaccgaatctgaaaattnnnnnnnnnn--tgaaatgagaatttgtttcgtctagaagggccaattcggacgtgtgaaataccagaac |
213 |
Q |
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| T |
2628678 |
atcagcattgttaaaccgaatctgaaaataaaaataaaaaaatgaaatgagaatttgtttcgtccagaagggccgattcggacgtgtgaaataccagcac |
2628777 |
T |
|
| Q |
214 |
agaattactattgaatcagacctgaatcgcttccaactctggcaaaatagatatatctggacaatcttcctttggcacaccgtcatcatcaaccaactct |
313 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2628778 |
agaattactattgaatcaaacctgaatcgcttccaactctggcaaaatagatatatctgaacaatcttcctttggcacaccgtcatcatcaaccaactct |
2628877 |
T |
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| Q |
314 |
tcagattttggacccttcatagacttgttataccttgaacgtgcattataaatctgcttgatagtaatcccatcgtcagctcttcttttcttcaaagtca |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2628878 |
tcagattttggacccttcatagacttgttataccttgaacgtgcattataaatctgcttgatagtaatcccatcgtcagctcttcttttcttcaaagtca |
2628977 |
T |
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| Q |
414 |
taagaatattttttggacggacagtgttatttgtcatctcatgaacgagtttcatctc |
471 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2628978 |
taagaatattttttggacggacagtgttatttgtcatctcatgaacgagtttcatctc |
2629035 |
T |
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