View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12809_high_3 (Length: 239)
Name: NF12809_high_3
Description: NF12809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12809_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 544381 - 544152
Alignment:
| Q |
1 |
gcacaagaaatttccataaaccacctcatgttatacaaccctcgacaattctgttttaccttttgtaaatttatctgcacctcatgttaatatgtccatg |
100 |
Q |
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| T |
544381 |
gcacaagaaatttccataaagcacctcatgttatacaaccctcgacaattctgttttaccttttgtaaatttatctgcacctcatgttaatatgtccatg |
544282 |
T |
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| Q |
101 |
ttgcat-------gttgtataattagatgattaataacctcaggataaggtaccattgttgagggtagaaaggctagtatcaccataacattactgcatc |
193 |
Q |
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| T |
544281 |
ttgcatcatgcatgttgtataattagatgactaataacctcaggataaggtaccattgttgagggtacaaaggctagtatcaccataacattactgcatc |
544182 |
T |
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| Q |
194 |
aaactaggatcatagtatcctagtttgatg |
223 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
544181 |
aaactaggatcatagtatcctagtttgatg |
544152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 96
Target Start/End: Complemental strand, 544542 - 544504
Alignment:
| Q |
58 |
accttttgtaaatttatctgcacctcatgttaatatgtc |
96 |
Q |
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| T |
544542 |
accttttgtaaatttctctgcacctcatgttaatatgtc |
544504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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