View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12809_low_4 (Length: 236)
Name: NF12809_low_4
Description: NF12809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12809_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 38096829 - 38096967
Alignment:
| Q |
20 |
tagggatggatgaggtgaagttaaaggaaacaaaagaggaaaagagggaggcaaaannnnnnnnagtgaaagagaaatgcataccgcttatgaaatcatc |
119 |
Q |
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| T |
38096829 |
tagggatggatgaggtgaagttaaaggaaacaaaagaggaaaagagggaggcaaaaggggg---agtgaaagagaaatgcataccgcttatgaaatcatc |
38096925 |
T |
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| Q |
120 |
caaagagagtaggaaatgatggtgatctggtctggtctggtc |
161 |
Q |
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| T |
38096926 |
caaagagagtaggaaatgatggtgatctggtatggtctggtc |
38096967 |
T |
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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 217
Target Start/End: Original strand, 38097020 - 38097055
Alignment:
| Q |
182 |
tctagtctaggtagaatatgtaatgagtacactagc |
217 |
Q |
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| T |
38097020 |
tctagtctaggtagaatatgtaatgagtacactagc |
38097055 |
T |
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