View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12809_low_6 (Length: 204)
Name: NF12809_low_6
Description: NF12809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12809_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 17232106 - 17232294
Alignment:
| Q |
1 |
ggttatactatttgacgtgttcgtgtatgtggtatgactttttatacttttgaataggtacgtgatttcggattatctcgaaggaagtacaatacgtacc |
100 |
Q |
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| T |
17232106 |
ggttatactatttgacgtgttcatgtatgtggtatgactttttatacttttgaataggtacgtgatttcggattatctcgaaggaagtacaatacgtacc |
17232205 |
T |
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| Q |
101 |
ttactcatagaacagacatgggaacagtaagctatcgtaattttttattaatcaattcattttttatatcctcctgattgaatgttcat |
189 |
Q |
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| T |
17232206 |
ttactcatagaacagacatgggaacagtaagctatcgtaattttttattaatcaattcattttttatatcctcctgattgaatgttcat |
17232294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 38946495 - 38946403
Alignment:
| Q |
3 |
ttatactatttgacgtgttcgtgtatgtggtatgactttttatacttttgaataggtacgtgatttcggattatctcgaaggaagtacaatac |
95 |
Q |
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| T |
38946495 |
ttatactatttgaactgttcatgtatatggtatgactttttttacttttgaataggtatgcgatttcaacttatctcaaatgaagtataatac |
38946403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 38946348 - 38946304
Alignment:
| Q |
145 |
ttattaatcaattcattttttatatcctcctgattgaatgttcat |
189 |
Q |
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| T |
38946348 |
ttatcaatcaattcattctttatatcatccttattgaatgttcat |
38946304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 1251006 - 1251061
Alignment:
| Q |
1 |
ggttatactatttgacgtgttcgtgtatgtggtatgactttttatacttttgaata |
56 |
Q |
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| T |
1251006 |
ggttatactatttgaattgttcatgtatgtggtatgactttttttacttatgaata |
1251061 |
T |
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