View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1280_high_10 (Length: 393)
Name: NF1280_high_10
Description: NF1280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1280_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 53 - 382
Target Start/End: Complemental strand, 11113488 - 11113159
Alignment:
| Q |
53 |
tacaagacatcaattctcgtattagagctacatgcaaacaaacaaaatacatatgctttcaaattggacaagttttctttcattaatacaataaaagaac |
152 |
Q |
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| T |
11113488 |
tacaagacatcaattctcgtaatagagctacatgcaaacaaacaaaatacatatgctttcaaattggacaagttttctttcattaatacaataaaagaac |
11113389 |
T |
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| Q |
153 |
agtacatacatactcattcaatatagtggttcttattctcttagctttacaataaataataataagcaatgacccttaacataataagtaaaaatgaatn |
252 |
Q |
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| T |
11113388 |
agtacatacatactcattcaatatagtggttcttattctcttagctttacaataaataataataagcaatgacccttaacataataagtaaaaatgaata |
11113289 |
T |
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| Q |
253 |
nnnnnnngatatggaaagacacttatgtgttgtgttagttacttagtttgagaggaacaattcgaagtggttgagccttttgtagagtaatcccaaattt |
352 |
Q |
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| T |
11113288 |
aaaaaaagatatggaaagacacttgtgtgttgtgttagttacttagtttgagaggaacaattcgaagtggttgagcctcccgtagagtaatcccaaattt |
11113189 |
T |
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| Q |
353 |
atcatccatgttcatatcttctggtttcat |
382 |
Q |
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| T |
11113188 |
atcatccatgttcatatcttctggtttcat |
11113159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 210 - 382
Target Start/End: Original strand, 11106159 - 11106321
Alignment:
| Q |
210 |
aataataagcaatgacccttaacataataagtaaaaatgaatnnnnnnnngatatggaaagacacttatgtgttgtgttagttacttagtttgagaggaa |
309 |
Q |
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| T |
11106159 |
aataataagcaatgacccttaacatagcaagtaaaaatgaa---gcaaaagatatggaaaaacactt-------gtgttagttacttagtttgagaggaa |
11106248 |
T |
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| Q |
310 |
caattcgaagtggttgagccttttgtagagtaatcccaaatttatcatccatgttcatatcttctggtttcat |
382 |
Q |
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| T |
11106249 |
caattcgaaggggttgagccttttgtagagtaatcccaaatttatcatccatgttcatatcttctggtttcat |
11106321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 302 - 382
Target Start/End: Complemental strand, 46927831 - 46927751
Alignment:
| Q |
302 |
gagaggaacaattcgaagtggttgagccttttgtagagtaatcccaaatttatcatccatgttcatatcttctggtttcat |
382 |
Q |
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| T |
46927831 |
gagaggaagaattcgaaggggtttggctttttgaagagtaagtccaaatttatcatccatatccatatcttctggtttcat |
46927751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 305 - 387
Target Start/End: Complemental strand, 46934698 - 46934616
Alignment:
| Q |
305 |
aggaacaattcgaagtggttgagccttttgtagagtaatcccaaatttatcatccatgttcatatcttctggtttcatctcac |
387 |
Q |
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|||||||| |||||| ||||| |||||||| | ||||| || |||||||||| ||||| |||||||||||||||||| |||| |
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| T |
46934698 |
aggaacaactcgaaggggttgtgccttttgcaaggtaatgccgaatttatcattcatgtccatatcttctggtttcatgtcac |
46934616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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