View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1280_high_11 (Length: 381)
Name: NF1280_high_11
Description: NF1280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1280_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 49 - 371
Target Start/End: Original strand, 8840244 - 8840583
Alignment:
| Q |
49 |
tagaggtctctgcaatcacatcgcaaccacaattttagtcacatcaattgcatgcatgtgtctagaaacaaattctatacaagttttggaggcgtccgca |
148 |
Q |
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| T |
8840244 |
tagaggtctctgcaatcacattgcaaccacaattttagtcatatcaatagcatgcatgtgtctagaaacaaattctatacatgttttggaggcgtccgca |
8840343 |
T |
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| Q |
149 |
accacattgcaatttttcgcaatgtcaagaatatttgacatacacaatttaaaatatttga-----------------tatagttaaaacaagcatggca |
231 |
Q |
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| T |
8840344 |
accacattgcaatttttcgcgatgtcaagaatatttgacatgcacaatttaaaatatttgaccataacattctcttgatatagttaaatcaaacatgaca |
8840443 |
T |
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| Q |
232 |
atttgactcattataacatatataagcattactcacctagtgcaattgcactaacaagaattgtgaaggataaaacaaagataatcaaggaagctctttg |
331 |
Q |
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| T |
8840444 |
atttgactcattataacatatataagcattacttacctagtgcaattgcactaacaagaattgtgaaggataaaacaaagataatcaaggaagctctttg |
8840543 |
T |
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| Q |
332 |
aaagatattgacaagcttgtcaatgattttctgtcctatg |
371 |
Q |
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| T |
8840544 |
aaagatattgacaagcttgtcaatgattttctgtcctatg |
8840583 |
T |
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