View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1280_high_18 (Length: 320)
Name: NF1280_high_18
Description: NF1280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1280_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 43856555 - 43856333
Alignment:
| Q |
1 |
ttgtacatttcctttggttccactgtgtctattaatgctaaaataaatcatttgttttttcaattttgagttctactttcagtaaaaagacaaaaatatc |
100 |
Q |
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| T |
43856555 |
ttgtacatttcctttggttccaccgtgtctattaatgctaaaataaatcatttgttttttcaattttgagttctactttcagtataaagacaaaaatatc |
43856456 |
T |
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| Q |
101 |
acataatccgcacaatgcacatgacagttgaactaaaatacattatttacattttgtcgcgttcatttatcgagcaataacaacttttaactatgaatca |
200 |
Q |
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| T |
43856455 |
acataatccgcacaatgcacatgacagtcgaactaaaatacattatttacattttgtcgcgttcatttatcgagcaataacaacgtttaactatgaatcc |
43856356 |
T |
|
| Q |
201 |
cggtatcacattaggcataaatc |
223 |
Q |
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||||||| ||||||||||||||| |
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| T |
43856355 |
cggtatcgcattaggcataaatc |
43856333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 14243982 - 14244142
Alignment:
| Q |
1 |
ttgtacatttcctttggttccactgtgtctattaatgctaaaataaatcatttgttttttcaattttgagttctactttcagtaaaaagacaaaaatatc |
100 |
Q |
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||||||||||||||||||||||| | |||||| ||||||||| | |||||||||||| ||||||||||||||| ||||||| ||||||||||||||| |
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| T |
14243982 |
ttgtacatttcctttggttccacactatctattgatgctaaaa--agtcatttgttttt-caattttgagttctaatttcagtctaaagacaaaaatatc |
14244078 |
T |
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| Q |
101 |
acata----atccgcacaatgcacatgacagttgaactaaaatacattatttacattttgtcgc |
160 |
Q |
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| T |
14244079 |
acatacataattcgcacaacgcacatgacagtcgaactaaaatagaatatttacattttgtcgc |
14244142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 1875034 - 1874895
Alignment:
| Q |
1 |
ttgtacatttcctttggttccactgtgtctattaatgctaaaataaatcatttgttttttcaattttgagttctactttcagtaaaaagacaaaaatatc |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||| ||||||||||||||||| |||||| ||||||||||||||| |
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| T |
1875034 |
ttgtacatttcctttggttccacaccgtctattgatgctaaaataagtcatttgttttt-caattttgagttctactatcagtataaagacaaaaatatc |
1874936 |
T |
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| Q |
101 |
ac----ataatccgcacaatgcacatgacagttgaactaaa |
137 |
Q |
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| T |
1874935 |
acataaataatccgcacaatgcacatgagagtcgaactaaa |
1874895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 6354532 - 6354692
Alignment:
| Q |
1 |
ttgtacatttcctttggttccactgtgtctattaatgctaaaataaatcatttgttttttcaattttgagttctactttcagtaaaaagacaaaaatatc |
100 |
Q |
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||||||||||||||||||||||| | || ||| ||||||||| | ||||||||||| ||||||| |||||||| |||||||| ||||||||||||||| |
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| T |
6354532 |
ttgtacatttcctttggttccacactatcaattgatgctaaaa--agtcatttgtttt-tcaatttagagttctaatttcagtataaagacaaaaatatc |
6354628 |
T |
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| Q |
101 |
----acataatccgcacaatgcacatgacagttgaactaaaatacattatttacattttgtcgc |
160 |
Q |
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||||||| ||||||| | |||||||||| ||||||||||| | ||||||||||||||||| |
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| T |
6354629 |
acatacataattcgcacaacgaacatgacagtcgaactaaaatagaatatttacattttgtcgc |
6354692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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