View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1280_high_19 (Length: 318)
Name: NF1280_high_19
Description: NF1280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1280_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 36 - 224
Target Start/End: Original strand, 21055881 - 21056069
Alignment:
| Q |
36 |
atctggtttatttcttgctgctttatatatctaattttttatgccggcactatatgatatttactcgcatttaccccatttctaatttccctatatgaat |
135 |
Q |
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| T |
21055881 |
atctggtttatttcttgctgctttatatatctaattttttatgccggcactatatgatatttactcgcatttaccccatttctaatttccctatatgaat |
21055980 |
T |
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| Q |
136 |
gatattatttggttgtgtgataatttgttttttgataagtcactgcattggactgtgaaacaacaatgtactccagtgatgcattgtat |
224 |
Q |
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| T |
21055981 |
gatattatttggttgtgtgataatttgttttttgataagtcactgcattggactgtgaaacaacaatgtgctccagtgatgcattgtat |
21056069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 38 - 203
Target Start/End: Complemental strand, 26363573 - 26363407
Alignment:
| Q |
38 |
ctggtttatttcttgctgctttatatatctaatttttt-atgccggcactatatgatatttactcgcatttaccccatttctaatttccctatatgaatg |
136 |
Q |
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| T |
26363573 |
ctggtttagttcctgctgctttatgtgtctgatttttttatgctggcactatgcgatctttactggcatttaccccatttctggtttatctatttgaatg |
26363474 |
T |
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| Q |
137 |
atattatttggttgtgtgataatttgttttttgataagtcactgcattggactgtgaaacaacaatg |
203 |
Q |
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| T |
26363473 |
atattatttggttgtgtaataatttgttctttgataagtaacttctttggattgtgaaacaacaatg |
26363407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 35 - 224
Target Start/End: Complemental strand, 26366064 - 26365877
Alignment:
| Q |
35 |
tatctggtttatttcttgctgctttatatatctaattttttatgccggcactatatgatatttactcgcatttaccccatttctaatttccctatatgaa |
134 |
Q |
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||||||||||| | ||||||||||||| | ||| ||||||||||| ||||| ||||||| |||||| ||||||||||||||||| ||| |||| |||| |
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| T |
26366064 |
tatctggtttagtccttgctgctttatgtgtctgattttttatgctggcacaatatgatctttactggcatttaccccatttctggtttatctatttgaa |
26365965 |
T |
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| Q |
135 |
tgatattatttggttgtgtgataatttgttttttgataagtcactgcattggactgtgaaacaacaatgtactccagtgatgcattgtat |
224 |
Q |
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|||| |||||| ||||||| |||||||||| |||||||||| ||| ||||| | |||| |||||||| | | ||||||||||||||| |
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| T |
26365964 |
tgatgttatttagttgtgtaataatttgttcattgataagtcgatgctttggattatgaatcaacaatgcagt--agtgatgcattgtat |
26365877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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