View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1280_high_2 (Length: 675)

Name: NF1280_high_2
Description: NF1280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1280_high_2
NF1280_high_2
[»] chr5 (12 HSPs)
chr5 (217-485)||(41703458-41703722)
chr5 (266-530)||(41467374-41467644)
chr5 (431-518)||(41506883-41506970)
chr5 (423-485)||(41513161-41513223)
chr5 (446-532)||(41497620-41497706)
chr5 (423-485)||(41522096-41522158)
chr5 (268-381)||(41513268-41513381)
chr5 (513-552)||(41703717-41703756)
chr5 (87-120)||(41703284-41703317)
chr5 (458-532)||(33077964-33078038)
chr5 (266-339)||(33078159-33078232)
chr5 (87-115)||(41523757-41523785)
[»] chr4 (1 HSPs)
chr4 (549-579)||(45650399-45650429)


Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 217 - 485
Target Start/End: Original strand, 41703458 - 41703722
Alignment:
Q  217 tttgaagtttttgtttgagtattatcatgtttggcaaatattaacatatatatctctttttggaccagctggtggaagtctgaaactggaaaatgagatt 316  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  41703458 tttgaagtttttgtttgagtattatcatgtttggcaaatataaacatat----ctcttgttggaccagctggtggaagtctgaaactggaaaatgagatt 41703553  T
Q  317 gagatcataaaccatgacaacgacgatgatcaatctatctctagaggagtacatgaaaagaaagcatgttctggaatcaccgcaaatccatgttcatcag 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41703554 gagatcataaaccatgacaacgacgatgatcaatctatctctagaggagtacatgaaaagaaagcatgttctggaatcaccgcaaatccatgttcatcag 41703653  T
Q  417 tggcactggcaacacaacaagaaagcaaatttgccaatgcagttgacagagtcaaaagaaaattttctt 485  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  41703654 tggcactggcaacacaacaagaaagcaaattttccaatgcagttgacagagtcaaaagaaaatcttctt 41703722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 266 - 530
Target Start/End: Complemental strand, 41467644 - 41467374
Alignment:
Q  266 atatctctttttggaccagctggtggaagtctgaaactggaaaatgagattgagatcataaaccatgacaacgacgatgatcaatctatctctagaggag 365  Q
    |||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||| ||   |||| ||||||||||||||  ||  ||||     
T  41467644 atatctctttttggaccagccggtggaagagtgaaactggaaaatgagattgagatcataaaccttg---acgatgatgatcaatctatgcctcaaggaa 41467548  T
Q  366 tacatgaaaagaaagcatgttctggaatcac---------cgcaaatccatgttcatcagtggcactggcaacacaacaagaaagcaaatttgccaatgc 456  Q
    ||||||||||||||||  ||| |||||||||          | | | ||| ||||||||| ||| ||| |||| |||||| |||||||||||| ||||||    
T  41467547 tacatgaaaagaaagctagttttggaatcactgtgaagattgaagagccaagttcatcaggggccctgacaacccaacaaaaaagcaaatttggcaatgc 41467448  T
Q  457 agttgacagagtcaaaagaaaattttcttccagcatctgtgaaacctccacttctacttctttcgatgattcat 530  Q
    ||||||||  ||||||||||||||||||| ||||  | |||||||||| ||||||||||| | ||||| |||||    
T  41467447 agttgacactgtcaaaagaaaattttctttcagcgacagtgaaacctcgacttctacttcctccgatggttcat 41467374  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 431 - 518
Target Start/End: Complemental strand, 41506970 - 41506883
Alignment:
Q  431 caacaagaaagcaaatttgccaatgcagttgacagagtcaaaagaaaattttcttccagcatctgtgaaacctccacttctacttctt 518  Q
    |||||| ||| ||| ||||| |||||||||||||  ||||||||||||||||||| ||||  | ||||||||||||||||| ||||||    
T  41506970 caacaaaaaaccaagtttgcaaatgcagttgacacggtcaaaagaaaattttctttcagcgacagtgaaacctccacttcttcttctt 41506883  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 423 - 485
Target Start/End: Complemental strand, 41513223 - 41513161
Alignment:
Q  423 tggcaacacaacaagaaagcaaatttgccaatgcagttgacagagtcaaaagaaaattttctt 485  Q
    |||||||||||||| ||||||||||| |||||||||||||||  || ||||||||||||||||    
T  41513223 tggcaacacaacaaaaaagcaaatttcccaatgcagttgacactgttaaaagaaaattttctt 41513161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 446 - 532
Target Start/End: Complemental strand, 41497706 - 41497620
Alignment:
Q  446 tttgccaatgcagttgacagagtcaaaagaaaattttcttccagcatctgtgaaacctccacttctacttctttcgatgattcattg 532  Q
    ||||| ||||| ||| ||| |||||||||||||||||||| ||||  | ||||||||||||||||| |||| |  ||||||||||||    
T  41497706 tttgcaaatgcggttaacacagtcaaaagaaaattttctttcagcgacagtgaaacctccacttcttcttcctctgatgattcattg 41497620  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 423 - 485
Target Start/End: Complemental strand, 41522158 - 41522096
Alignment:
Q  423 tggcaacacaacaagaaagcaaatttgccaatgcagttgacagagtcaaaagaaaattttctt 485  Q
    |||||||||||||| ||||||||||| |||||||||||||||   | ||||||||||||||||    
T  41522158 tggcaacacaacaaaaaagcaaatttcccaatgcagttgacacttttaaaagaaaattttctt 41522096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 268 - 381
Target Start/End: Complemental strand, 41513381 - 41513268
Alignment:
Q  268 atctctttttggaccagctggtggaagtctgaaactggaaaatgagattgagatcataaaccatgacaacgacgatgatcaatctatctctagaggagta 367  Q
    ||||||||||| | ||||| |||||||  |||||||||| ||  | |||||| ||||| ||| |||| ||||||||| |   ||||| ||| ||||||||    
T  41513381 atctctttttgtatcagctagtggaagagtgaaactggataagaatattgaggtcatataccttgacgacgacgatgttgggtctatgtctcgaggagta 41513282  T
Q  368 catgaaaagaaagc 381  Q
    ||||||||||||||    
T  41513281 catgaaaagaaagc 41513268  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 513 - 552
Target Start/End: Original strand, 41703717 - 41703756
Alignment:
Q  513 cttctttcgatgattcattgccttttctccataatcttac 552  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  41703717 cttctttcgatggttcattgccttttctccataatcttac 41703756  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 120
Target Start/End: Original strand, 41703284 - 41703317
Alignment:
Q  87 catcatcaggtatatggaaattatgcatgtattt 120  Q
    ||||||||||||||||||||||||||||||||||    
T  41703284 catcatcaggtatatggaaattatgcatgtattt 41703317  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 458 - 532
Target Start/End: Complemental strand, 33078038 - 33077964
Alignment:
Q  458 gttgacagagtcaaaagaaaattttcttccagcatctgtgaaacctccacttctacttctttcgatgattcattg 532  Q
    ||||||| |||||||||||||| ||||| || |  | ||||||||||||||||||| || | |||||||| ||||    
T  33078038 gttgacacagtcaaaagaaaatattctttcaccgacagtgaaacctccacttctacgtcctccgatgatttattg 33077964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 339
Target Start/End: Complemental strand, 33078232 - 33078159
Alignment:
Q  266 atatctctttttggaccagctggtggaagtctgaaactggaaaatgagattgagatcataaaccatgacaacga 339  Q
    ||||||||||||| ||||| |||||||||  ||||| || |||| || || ||| ||||||||| |||||||||    
T  33078232 atatctctttttgtaccagttggtggaagattgaaattgaaaaaggatatggaggtcataaaccttgacaacga 33078159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 41523785 - 41523757
Alignment:
Q  87 catcatcaggtatatggaaattatgcatg 115  Q
    |||||||||||||||||||||||||||||    
T  41523785 catcatcaggtatatggaaattatgcatg 41523757  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 549 - 579
Target Start/End: Original strand, 45650399 - 45650429
Alignment:
Q  549 ttactagaaaacaagttgttattattggagt 579  Q
    |||||||||||||||||||||||||||||||    
T  45650399 ttactagaaaacaagttgttattattggagt 45650429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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