View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1280_high_6 (Length: 508)
Name: NF1280_high_6
Description: NF1280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1280_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 5016367 - 5016609
Alignment:
| Q |
1 |
cacaccaaatccatttcctactttcatatgtgccgtttggactttggtcaaaacccttaatgcttgaattcacagtttgccaccaattggctatacttca |
100 |
Q |
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| T |
5016367 |
cacaccaaatccatttcctactttcatatgtgccgtttggactttggtcaaaaccctta-tgcttgaattcacagtttgccaccaattggctatacttca |
5016465 |
T |
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| Q |
101 |
ctctaggttataattgtaacactcgtaccttatatgaatatccctcactatggaaatcaagaacaaggataagaatcacgaacccctggtattttatttt |
200 |
Q |
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| T |
5016466 |
ctctaggttatagttgtaacactcgtaccttatacgaatatccctcactatggaaaccaagaacaaggataagaatcacgaacccctggtattttatttt |
5016565 |
T |
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| Q |
201 |
atttttgtgttatttctaccaatatgttcaatcttctatttctt |
244 |
Q |
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| T |
5016566 |
atttttgtgttatttctaccaatatgttcaattttctatttctt |
5016609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 285 - 431
Target Start/End: Original strand, 5016606 - 5016750
Alignment:
| Q |
285 |
tcttcgctttctccttcgttttagctttgttaatgacgagatttgagacatttgcatttgaagatgaaatgctaatgatgtatttattaaaaataacttt |
384 |
Q |
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| T |
5016606 |
tcttcgctttctccttcgttttagctt-gttaatgacgagatttgagacatttgcatttgaagatgaaatgctaatgatgtatttatt-aaaataacttt |
5016703 |
T |
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| Q |
385 |
taacatttttattatttctaacaaattgagacaattgtatacttaca |
431 |
Q |
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| T |
5016704 |
taacatttttattatttctaacaaattgagacaattgtatacttaca |
5016750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 427 - 483
Target Start/End: Original strand, 5017200 - 5017256
Alignment:
| Q |
427 |
ttacatttttgtctatttcaattcgccccattttcattttattaagatgaatatgat |
483 |
Q |
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| T |
5017200 |
ttacagttttgtctatttcaattcgccccattttcattttattaagatgaatatgat |
5017256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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