View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1280_low_1 (Length: 693)
Name: NF1280_low_1
Description: NF1280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1280_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 6e-82; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 150 - 414
Target Start/End: Complemental strand, 21526733 - 21526475
Alignment:
| Q |
150 |
ctttcttctattaatagtaccaactattgcggtttgttactgctgctga-------ctgactccatggcgcgtgaacgcggataacatcaacaaccaacc |
242 |
Q |
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| T |
21526733 |
ctttcttctattaatagtaccaactattgcggtttgttactgctgctgagtgctgactgactccatggcgcgtgaacgcggataacatcaacaa------ |
21526640 |
T |
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| Q |
243 |
acgacacaagtttgtgtagtagtagtgtgaatctatcaaactctttatggactagactagact-----ctagagtagactacaatatttcaaatcgttga |
337 |
Q |
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| T |
21526639 |
---------gtttgtgtagtagt---gtgaatctatcaaactctttatggactagactagactagactctagagtagactacactatttcaaattgttca |
21526552 |
T |
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| Q |
338 |
atactttactaaataaattactaacaacttacttaaaatagacctacctacttttcctataattaacaacaatggag |
414 |
Q |
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| T |
21526551 |
atactttactaaataaattactaacaacttacttaaaatagacctacctacttttcctataattaacaacaatggag |
21526475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 466 - 610
Target Start/End: Complemental strand, 21526479 - 21526332
Alignment:
| Q |
466 |
tggagacaaaagactttcaactatcatttaccttagacaccaaggaaacatttggtgattcatcaatagatcttccaaattgctcaatca---atcgcgt |
562 |
Q |
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| T |
21526479 |
tggagacataagactttcaactatcatttaccttagacaccaaggaaacatttggtgattcatcaataggtcttccaaattgctcaatcacccgtggtgt |
21526380 |
T |
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| Q |
563 |
catatttttcgatggccattttttgtggagaaatgatatttgtacaac |
610 |
Q |
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| T |
21526379 |
catatttttcgatggccattttttgtggagaaatgatatttgtacaac |
21526332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 153
Target Start/End: Complemental strand, 21526806 - 21526771
Alignment:
| Q |
118 |
cggcaaatagatgtaagaaagtcaagagaggacttt |
153 |
Q |
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| T |
21526806 |
cggcaaataaatgtaagaaagtcaagagaggacttt |
21526771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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