View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1280_low_14 (Length: 351)
Name: NF1280_low_14
Description: NF1280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1280_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 133; Significance: 4e-69; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 198 - 342
Target Start/End: Original strand, 26880547 - 26880691
Alignment:
| Q |
198 |
cattactggtatcatcaaaatacaaaactttcatcagtgaaaattaaatgcttcggaaaaaacttgccctaaaaacacaacaccgcaagcaacaagacat |
297 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26880547 |
cattactgttatcatcaaaatacaaaacttttatcagtgaaaattaaatgcttcggaaaaaacttgccctaaaaacacaacaccgcaagcaacaagacat |
26880646 |
T |
|
| Q |
298 |
aaaaattaagatggtaagagtttatggaaatgaacatacctatgc |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26880647 |
gaaaattaagatggtaagagtttatggaaatgaacatacctatgc |
26880691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 92 - 150
Target Start/End: Original strand, 26880488 - 26880546
Alignment:
| Q |
92 |
aactacaaagtatgaaaatacaatgtaagacgaaatttcaagagtatctataatgactg |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26880488 |
aactacaaagtatgaaaatacaatgtaagacgaaatttcaagagtatctataatgactg |
26880546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 134
Target Start/End: Original strand, 40250203 - 40250245
Alignment:
| Q |
92 |
aactacaaagtatgaaaatacaatgtaagacgaaatttcaaga |
134 |
Q |
| |
|
|||| |||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
40250203 |
aactgcaaaatatgaaaatataatgtaagacgaaatttcaaga |
40250245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 146
Target Start/End: Original strand, 40707448 - 40707502
Alignment:
| Q |
92 |
aactacaaagtatgaaaatacaatgtaagacgaaatttcaagagtatctataatg |
146 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||| |||| ||||||||||| |
|
|
| T |
40707448 |
aactacaaagtatgaaaatataatgtaagacagaattttaagaatatctataatg |
40707502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University