View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1280_low_15 (Length: 336)
Name: NF1280_low_15
Description: NF1280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1280_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 4 - 325
Target Start/End: Original strand, 54220917 - 54221245
Alignment:
| Q |
4 |
ttgattttgttctagtgcgtcatctaatgtttttattagctaataatgcatttcatttattttcttattcttatttttctcttgaatgatggttgcagcg |
103 |
Q |
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| T |
54220917 |
ttgattttgttctagtgcgtcatctaatgtttttattagctaaaaatgcatttcatttattttcttattcttatttttctcttgaatgatggttgcagcg |
54221016 |
T |
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| Q |
104 |
aactgtgattgttcctcctgaaaaagggtatggaaaaaagggaatgaatgagattccggtaaagatctgttctcgtcatctcatgtcttccaacatagat |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
54221017 |
aactgtgattgttcctcctgaaaaagggtatggaaaaaagggaatgaatgagattccggtaaagatctgttcttgtcatctcatgtctttcaacatagat |
54221116 |
T |
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| Q |
204 |
tctaatttaacttccttaaattctgcttttcattgttgatcctg-------catctagcaaatctattgaaacatacacttaggacaagtgccttaagcg |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54221117 |
tctaatttaacttccttaaattctgcttttcattgttgatcctgatgtccccatctagcaaatctattgaaacatacacttaggacaagtgccttaagcg |
54221216 |
T |
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| Q |
297 |
ttgttatgaaagttgttttgccactctgt |
325 |
Q |
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|||| |||||||||||||||||||||||| |
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| T |
54221217 |
ttgtcatgaaagttgttttgccactctgt |
54221245 |
T |
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