View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1280_low_17 (Length: 332)
Name: NF1280_low_17
Description: NF1280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1280_low_17 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 176; Significance: 9e-95; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 24 - 234
Target Start/End: Complemental strand, 75838 - 75627
Alignment:
| Q |
24 |
cagaacctgtgagaatagtaacaaaatacaaaagaaataaaatgcagttaataaatccctttcttgtcgttaatctagaaagaaaaaagtattctaaata |
123 |
Q |
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| T |
75838 |
cagaacatgtgagaatagtaacaaaatacaaaagaaataaaatgcagttaataaatccctttcttgtcgttaatctagaaagaaaaaagtattctaaata |
75739 |
T |
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| Q |
124 |
caaattatatttttctaccaaacattt-nnnnnnnntgcaaaatcaaactcttttgcaagagcccctcttttgagattagaattcttttgtcagaacaga |
222 |
Q |
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| T |
75738 |
caaattatatttttctaccaaacatttaaaaaaaaatgcaaaatcaaactcttttgcaagagcccctcttttgagattagaattcttttgtcagaacaga |
75639 |
T |
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| Q |
223 |
atatgagtgagt |
234 |
Q |
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|||||||||||| |
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| T |
75638 |
atatgagtgagt |
75627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 28484679 - 28484766
Alignment:
| Q |
34 |
gagaatagtaacaaaatacaaaagaaataaaatgcagttaataaatccctttcttgtcgttaatctagaaagaaaaaagtattctaaa |
121 |
Q |
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| T |
28484679 |
gagaatagtaagaaaatacaaaatgaatgaagtgcagttagtatatccctttgttatcctcaatctagaaagaaaggagtattctaaa |
28484766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 29715155 - 29715238
Alignment:
| Q |
25 |
agaacctgtgagaatagtaacaaaatacaaaagaaataaaatgcagttaataaatccctttcttgtcgttaatctagaaagaaa |
108 |
Q |
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| T |
29715155 |
agaacatgggagaatagtaagaaaatacaaaatgaatgaagtgcagttagtatatccctttattatcgtcaatctagaaagaaa |
29715238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 29797091 - 29797178
Alignment:
| Q |
34 |
gagaatagtaacaaaatacaaaagaaataaaatgcagttaataaatccctttcttgtcgttaatctagaaagaaaaaagtattctaaa |
121 |
Q |
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| T |
29797091 |
gagaatagtaagaaaatacaaaatgaatgaagtgcagttagtatatccctttgttatcctcaatctagaaagaaaggagtattctaaa |
29797178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 121
Target Start/End: Original strand, 28500408 - 28500489
Alignment:
| Q |
40 |
agtaacaaaatacaaaagaaataaaatgcagttaataaatccctttcttgtcgttaatctagaaagaaaaaagtattctaaa |
121 |
Q |
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| T |
28500408 |
agtaagaaaatacaaaatgaatgaagtgtagttagtaaatccctttctagtcgtcaatctagaaagagaggagtattctaaa |
28500489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 29708014 - 29708079
Alignment:
| Q |
25 |
agaacctgtgagaatagtaacaaaatacaaaagaaataaaatgcagttaataaatccctttcttgt |
90 |
Q |
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| T |
29708014 |
agaacatgtgagaatactaagaaaatacaaaatgaataaagtgcagttagtaaatccatttcttgt |
29708079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 121
Target Start/End: Original strand, 29812819 - 29812900
Alignment:
| Q |
40 |
agtaacaaaatacaaaagaaataaaatgcagttaataaatccctttcttgtcgttaatctagaaagaaaaaagtattctaaa |
121 |
Q |
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| T |
29812819 |
agtaagaaaatacaaaatgaatgaagtgtagttagtaaatccctttctagtcgtcaatctagaaagagaggagtattctaaa |
29812900 |
T |
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