View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1280_low_20 (Length: 329)

Name: NF1280_low_20
Description: NF1280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1280_low_20
NF1280_low_20
[»] chr3 (1 HSPs)
chr3 (1-315)||(49773146-49773460)
[»] chr7 (9 HSPs)
chr7 (136-263)||(39547484-39547611)
chr7 (136-242)||(39338731-39338837)
chr7 (159-245)||(39589335-39589421)
chr7 (133-242)||(39538023-39538132)
chr7 (136-263)||(39366063-39366190)
chr7 (133-242)||(39564260-39564369)
chr7 (159-239)||(39353577-39353657)
chr7 (133-239)||(39575071-39575177)
chr7 (136-239)||(1084820-1084923)
[»] chr2 (3 HSPs)
chr2 (130-251)||(44210993-44211114)
chr2 (130-251)||(44223155-44223276)
chr2 (163-251)||(44234010-44234098)
[»] chr4 (3 HSPs)
chr4 (163-251)||(2887022-2887110)
chr4 (163-248)||(2877258-2877343)
chr4 (163-236)||(2897266-2897339)
[»] chr1 (2 HSPs)
chr1 (117-263)||(2160835-2160981)
chr1 (156-245)||(19542696-19542785)
[»] chr8 (1 HSPs)
chr8 (156-245)||(43529464-43529553)


Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 49773460 - 49773146
Alignment:
Q  1 caatgaacatctgaaattagtggtgtgtgttgcatgtcttgttaatatactctgattttatctacaaagtaaaagagaaacacaaaattaacaaacttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  49773460 caatgaacatctgaaattagtggtgtgtgttgcatgtcttgttaatatactctgattttatctacaaagtaaaagagaaacacaaaattgacaaacttta 49773361  T
Q  101 cctttcttgtagaagtatcaacctcggggggtaaccggagccatgcagaataaacaagagattcatagacagtaacatggggagagtggatatcagtttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49773360 cctttcttgtagaagtatcaacctcggggggtaaccggagccatgcagaataaacaagagattcatagacagtaacatggggagagtggatatcagtttg 49773261  T
Q  201 ctcacagtatcctgatatccgagcaaatgtttcttgcttcttagggtacccggatatagtgatttgtccttgaacatatcctgttgttttccttccagac 300  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49773260 ctcacagtatcctgatatccgagaaaatgtttcttgcttcttagggtacccggatatagtgatttgtccttgaacatatcctgttgttttccttccagac 49773161  T
Q  301 agcacatccattaga 315  Q
    |||||||||||||||    
T  49773160 agcacatccattaga 49773146  T

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Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 136 - 263
Target Start/End: Original strand, 39547484 - 39547611
Alignment:
Q  136 cggagccatgcagaataaacaagagattcatagacagtaacatggggagagtggatatcagtttgctcacagtatcctgatatccgagcaaatgtttctt 235  Q
    ||||||||||| ||||| |  | ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || |  ||||| || ||||    
T  39547484 cggagccatgctgaatagagcaaagattcatagacagtaacatgaggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtatctt 39547583  T
Q  236 gcttcttagggtacccggatatagtgat 263  Q
    ||||||| || || || ||||| |||||    
T  39547584 gcttctttggatagccagatattgtgat 39547611  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 242
Target Start/End: Complemental strand, 39338837 - 39338731
Alignment:
Q  136 cggagccatgcagaataaacaagagattcatagacagtaacatggggagagtggatatcagtttgctcacagtatcctgatatccgagcaaatgtttctt 235  Q
    ||||||||||| ||||| |  | ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || || |  ||||| |||||||    
T  39338837 cggagccatgctgaatagagcaaagattcatagacagtaacatgaggagaatggatatcagtttgctcacagtatccagaaattcttgcaaaggtttctt 39338738  T
Q  236 gcttctt 242  Q
    |||||||    
T  39338737 gcttctt 39338731  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 245
Target Start/End: Original strand, 39589335 - 39589421
Alignment:
Q  159 agattcatagacagtaacatggggagagtggatatcagtttgctcacagtatcctgatatccgagcaaatgtttcttgcttcttagg 245  Q
    ||||||||| ||||||||||| ||||||||||||||| |||||||||||||||| || || |  |||||||||||||||||||||||    
T  39589335 agattcatatacagtaacatgaggagagtggatatcattttgctcacagtatccagaaattcttgcaaatgtttcttgcttcttagg 39589421  T

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Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 133 - 242
Target Start/End: Original strand, 39538023 - 39538132
Alignment:
Q  133 aaccggagccatgcagaataaacaagagattcatagacagtaacatggggagagtggatatcagtttgctcacagtatcctgatatccgagcaaatgttt 232  Q
    |||||||||||||| ||||| |  | ||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||| || |  ||||| || |    
T  39538023 aaccggagccatgctgaatagagcaaagattcatagacagtaacataaggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtat 39538122  T
Q  233 cttgcttctt 242  Q
    ||||||||||    
T  39538123 cttgcttctt 39538132  T

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Target: chr7; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 136 - 263
Target Start/End: Complemental strand, 39366190 - 39366063
Alignment:
Q  136 cggagccatgcagaataaacaagagattcatagacagtaacatggggagagtggatatcagtttgctcacagtatcctgatatccgagcaaatgtttctt 235  Q
    ||||||||||| ||||| |  | ||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| || || |  ||||| |||||||    
T  39366190 cggagccatgctgaatagagtaaagattcatagacagtaacatgaggagaatggatatcagtttgctcgcagtatccagaaattcttgcaaaggtttctt 39366091  T
Q  236 gcttcttagggtacccggatatagtgat 263  Q
    ||||||| || || || ||||| |||||    
T  39366090 gcttctttggatagccagatattgtgat 39366063  T

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Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 242
Target Start/End: Original strand, 39564260 - 39564369
Alignment:
Q  133 aaccggagccatgcagaataaacaagagattcatagacagtaacatggggagagtggatatcagtttgctcacagtatcctgatatccgagcaaatgttt 232  Q
    |||||||||||||| ||||| |  | ||||||||||||||||||||  ||||||||||||||| ||||||||||||| || || || |  ||||| ||||    
T  39564260 aaccggagccatgctgaatagagcaaagattcatagacagtaacataaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggttt 39564359  T
Q  233 cttgcttctt 242  Q
    ||||||||||    
T  39564360 cttgcttctt 39564369  T

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Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 39353657 - 39353577
Alignment:
Q  159 agattcatagacagtaacatggggagagtggatatcagtttgctcacagtatcctgatatccgagcaaatgtttcttgctt 239  Q
    ||||||||||||||||||||  ||||| |||||||||||||||||||||||||| || || |  ||||| |||||||||||    
T  39353657 agattcatagacagtaacataaggagaatggatatcagtttgctcacagtatccagaaattcttgcaaaggtttcttgctt 39353577  T

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Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 39575071 - 39575177
Alignment:
Q  133 aaccggagccatgcagaataaacaagagattcatagacagtaacatggggagagtggatatcagtttgctcacagtatcctgatatccgagcaaatgttt 232  Q
    |||||||||||||| ||||| |  | ||| |||||||| |||| ||| |||||||| |||||| |||||||||||||||| || || |  ||||| ||||    
T  39575071 aaccggagccatgctgaatagagcaaagactcatagaccgtaatatgaggagagtgtatatcattttgctcacagtatccggaaattcttgcaaaggttt 39575170  T
Q  233 cttgctt 239  Q
    |||||||    
T  39575171 cttgctt 39575177  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 239
Target Start/End: Original strand, 1084820 - 1084923
Alignment:
Q  136 cggagccatgcagaataaacaagagattcatagacagtaacatggggagagtggatatcagtttgctcacagtatcctgatatccgagcaaatgtttctt 235  Q
    ||||||||||| ||||| |  | ||| || |||||||||| ||| ||||| ||||||||  |||||||||||||||| || || |  | |||||||||||    
T  1084820 cggagccatgctgaatagagcaaagactcgtagacagtaaaatgaggagaatggatatctatttgctcacagtatccagaaattcttgtaaatgtttctt 1084919  T
Q  236 gctt 239  Q
    ||||    
T  1084920 gctt 1084923  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 130 - 251
Target Start/End: Original strand, 44210993 - 44211114
Alignment:
Q  130 ggtaaccggagccatgcagaataaacaagagattcatagacagtaacatggggagagtggatatcagtttgctcacagtatcctgatatccgagcaaatg 229  Q
    ||||| || |||||||| || |||| ||| |||||||| || |||||||| || || || |||||| | || |||||||| || ||||| | ||||||||    
T  44210993 ggtaaacgaagccatgctgagtaaagaagggattcataaactgtaacatgaggtgaatgaatatcattctgttcacagtagccagatattctagcaaatg 44211092  T
Q  230 tttcttgcttcttagggtaccc 251  Q
    |||||||||| |||||||||||    
T  44211093 tttcttgctttttagggtaccc 44211114  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 251
Target Start/End: Original strand, 44223155 - 44223276
Alignment:
Q  130 ggtaaccggagccatgcagaataaacaagagattcatagacagtaacatggggagagtggatatcagtttgctcacagtatcctgatatccgagcaaatg 229  Q
    ||||| || ||||| || |||||||  | ||| ||||| || |||||||| || || ||||||||| | ||||||||||| || || || | ||||||||    
T  44223155 ggtaaacgaagccacgccgaataaagcaaagactcataaactgtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaaatg 44223254  T
Q  230 tttcttgcttcttagggtaccc 251  Q
    |||||||||| |||||||||||    
T  44223255 tttcttgctttttagggtaccc 44223276  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 251
Target Start/End: Original strand, 44234010 - 44234098
Alignment:
Q  163 tcatagacagtaacatggggagagtggatatcagtttgctcacagtatcctgatatccgagcaaatgtttcttgcttcttagggtaccc 251  Q
    ||||| || |||||||| || || ||||||||| | ||||||||||| || || || | |||||||||||||||||| ||||| |||||    
T  44234010 tcataaactgtaacatgaggtgaatggatatcattctgctcacagtaaccggagattctagcaaatgtttcttgctttttaggataccc 44234098  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 251
Target Start/End: Complemental strand, 2887110 - 2887022
Alignment:
Q  163 tcatagacagtaacatggggagagtggatatcagtttgctcacagtatcctgatatccgagcaaatgtttcttgcttcttagggtaccc 251  Q
    ||||||||||||||||| ||||| ||||||||| | |||||||| || || || || |||||||| |||||||| || |||||||||||    
T  2887110 tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtaccc 2887022  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 248
Target Start/End: Complemental strand, 2877343 - 2877258
Alignment:
Q  163 tcatagacagtaacatggggagagtggatatcagtttgctcacagtatcctgatatccgagcaaatgtttcttgcttcttagggta 248  Q
    |||||||||||||| || || |||||||||||| | |||||||| || || || || | |||||||||||||||||| ||||||||    
T  2877343 tcatagacagtaacttgaggggagtggatatcattctgctcacaatagccagagattctagcaaatgtttcttgctttttagggta 2877258  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 2897266 - 2897339
Alignment:
Q  163 tcatagacagtaacatggggagagtggatatcagtttgctcacagtatcctgatatccgagcaaatgtttcttg 236  Q
    ||||||||||||||||| ||||| ||||||||| | |||||||| || || || || |||||||| ||||||||    
T  2897266 tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttg 2897339  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 263
Target Start/End: Original strand, 2160835 - 2160981
Alignment:
Q  117 atcaacctcggggggtaaccggagccatgcagaata-aacaagagattcatagacagtaacatggggagagtggatatcagtttgctcacagtatcctga 215  Q
    |||||| || || ||||| || |||||||| ||||| ||||| ||||||||| || |||||||  || || |||||||||  |||||| || ||||| ||    
T  2160835 atcaacttcaggtggtaaacgaagccatgccgaatataacaa-agattcataaactgtaacattaggtgaatggatatcaaattgctcgcaatatcccga 2160933  T
Q  216 tatccgagcaaatgtttcttgcttcttagggtacccggatatagtgat 263  Q
    ||| ||||||||||||| ||| ||||| || || |||||||| |||||    
T  2160934 tatgcgagcaaatgttttttgattctttggatagccggatattgtgat 2160981  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 19542785 - 19542696
Alignment:
Q  156 aagagattcatagacagtaacatggggagagtggatatcagtttgctcacagtatcctgatatccgagcaaatgtttcttgcttcttagg 245  Q
    |||||||||||| || |||| || |||||||||||||||| |||| ||||| || ||    ||||||||||| ||| |||| ||||||||    
T  19542785 aagagattcataaactgtaatattgggagagtggatatcattttgttcacaataaccgctaatccgagcaaaagttgcttggttcttagg 19542696  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 43529553 - 43529464
Alignment:
Q  156 aagagattcatagacagtaacatggggagagtggatatcagtttgctcacagtatcctgatatccgagcaaatgtttcttgcttcttagg 245  Q
    |||||||||||| || |||| || |||||||||||||||| |||| ||||| || ||    ||||||||||| ||| |||| ||||||||    
T  43529553 aagagattcataaactgtaatattgggagagtggatatcattttgttcacaataaccgctaatccgagcaaaagttgcttggttcttagg 43529464  T

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