View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1280_low_29 (Length: 300)
Name: NF1280_low_29
Description: NF1280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1280_low_29 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 9 - 300
Target Start/End: Original strand, 21055560 - 21055851
Alignment:
| Q |
9 |
gaataatatgggagggaaggtacatatatactttttgaaaggatgtatctaataaaatgctcctttttgatgctttagaagacagacnnnnnnnnaagta |
108 |
Q |
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| T |
21055560 |
gaataacatgggagggaaagtacatatatactttttgaaaggatgtatctaataaaatgctcctttttgatgctttagaagacagacttttttttaagta |
21055659 |
T |
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| Q |
109 |
ttttaatgaggcattttactactcacagtaaagaattgaaaaatacaccaaaaaaggtggaattatctcatgcatagagatttttactagttaaaggtgt |
208 |
Q |
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| T |
21055660 |
ttttaatgaggcattttactactcacagtaaagcattgaaaaatacaccaaaaaaggtggaattatctcatgcatagagatttttactggttaaaggtgt |
21055759 |
T |
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| Q |
209 |
cactgaaatttttaaaattcagaaaatactttggactctcattctgaattgatgttgcaatttctgattatgtatctgagacctgtgagagt |
300 |
Q |
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| T |
21055760 |
cactgaaatttttaaaattcagaaaatactttggactctcattctgaattgatgttgcaattgctgattatgcatctgagacctgtgagagt |
21055851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 26363799 - 26363614
Alignment:
| Q |
9 |
gaataatatgggagggaaggtacatatatact-ttttgaaaggatgtatctaataaaatgctcct-ttttgatgctttagaagacagac--nnnnnnnna |
104 |
Q |
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| T |
26363799 |
gaataacatgggtgggaaagtacgtatattttgttttgaaaggatatctctaataaaatgctcctttttttatgttttacaaggcagacttaaaatttga |
26363700 |
T |
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| Q |
105 |
agtattttaatgaggcattttactactcacagtaaagaattgaaaaatacaccaaaaaaggtggaattatctcatgcatagagatt |
190 |
Q |
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| T |
26363699 |
agtattttaatgaggcattttactactcacaataaagaattgaaaaatccaccaaaaaaggtggaattatcacatgaatagagatt |
26363614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 104 - 190
Target Start/End: Complemental strand, 26366255 - 26366169
Alignment:
| Q |
104 |
aagtattttaatgaggcattttactactcacagtaaagaattgaaaaatacaccaaaaaaggtggaattatctcatgcatagagatt |
190 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||| ||||||||||| ||||||| |||||| |
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| T |
26366255 |
aagtattttaatgaggcattttactactcacaataaagaattgaaatatccaccaaaaagagtggaattatcacatgcatggagatt |
26366169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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