View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1280_low_30 (Length: 293)
Name: NF1280_low_30
Description: NF1280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1280_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 52536248 - 52536423
Alignment:
| Q |
16 |
ccggtcgaataataattgagaataaggaatagctgacacgagaatagg-aagttaccccaaccattaattagtttttctctttttctcatcttatcttac |
114 |
Q |
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| T |
52536248 |
ccggtcgaataataattgagaataaggaatagctgacacgagaatagggaagttaccccaaccattaattagtttttctctttttctcatcttatcttac |
52536347 |
T |
|
| Q |
115 |
agagtaattttgttatatttcttctgttctgaatcagttatatataaatttcattcttgttcaactactagaatat |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52536348 |
agagtaattttgttatatttcttctgttctgaatcagttatatataaatttcattcttgttcaactactagaatat |
52536423 |
T |
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