View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1280_low_32 (Length: 274)
Name: NF1280_low_32
Description: NF1280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1280_low_32 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 7 - 274
Target Start/End: Complemental strand, 25545417 - 25545150
Alignment:
| Q |
7 |
tcgaagaatatgagggatgaagagttgtatctgcgacttatggaattaacataagggtatgcaaagagttgtagactccttggcatatcattcaaggaac |
106 |
Q |
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| T |
25545417 |
tcgaaaaaaatgagggattaagagttgtatctgcgacttatggaattaacataagggtatgcaaagagttgtagactccttggcatatcattcaaggaac |
25545318 |
T |
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| Q |
107 |
acaaatctttagaaagtaatcaatactatcaccaagagctagttagaatccacagcttgttctacgcaaactgcaaagtaaaactccgatggttaacccg |
206 |
Q |
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| T |
25545317 |
acaaatctttagaaagtaatcaatactatcaccaagagctagttagaatccacagcttgttctccgcaaactgcaaagtaaaactccgatggttaacccg |
25545218 |
T |
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| Q |
207 |
acaaaagaccaaatggcagcaagaatatgagagagcagcagatacacagaaaaggaaccgaaggaatc |
274 |
Q |
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| T |
25545217 |
acaaaagaccaaatggcagcaagaatatgagagagcagcaggtacacagaaaaggaaccgaaggaatc |
25545150 |
T |
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Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 178 - 273
Target Start/End: Original strand, 1154496 - 1154591
Alignment:
| Q |
178 |
tgcaaagtaaaactccgatggttaacccgacaaaagaccaaatggcagcaagaatatgagagagcagcagatacacagaaaaggaaccgaaggaat |
273 |
Q |
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| T |
1154496 |
tgcaaagtaaaactccgatggttaacctggcaaaagaccaaacggcagcaagaatatgatagagcagtagttacacagaaaaggaaccgaaggaat |
1154591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 1155160 - 1155121
Alignment:
| Q |
172 |
gcaaactgcaaagtaaaactccgatggttaacccgacaaa |
211 |
Q |
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| T |
1155160 |
gcaaactgcaaagtaaaactccgatagttaacccggcaaa |
1155121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 38041466 - 38041406
Alignment:
| Q |
16 |
atgagggatgaagagttgtatctgcgacttatggaattaacataagggtatgcaaagagtt |
76 |
Q |
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| T |
38041466 |
atgagggacgaagagttgtatccgcaacttctggaattaacagaggggtatgcaaagagtt |
38041406 |
T |
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