View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1280_low_38 (Length: 251)
Name: NF1280_low_38
Description: NF1280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1280_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 43416142 - 43415896
Alignment:
| Q |
1 |
actactgatattcatggatgttgccttcaacaacattgccatcatacaacttggttaatgagtcaatattgttccattccatgtaaatcaaatatagaca |
100 |
Q |
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| T |
43416142 |
actactgatattcatggatgttgccttcaacaacattgccatcatacaacttggttaatgagtcaatattgttccattccatgtaaatcaaatatagaca |
43416043 |
T |
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| Q |
101 |
gttcgacacatgtccagtgaaaagttgagggttgactttgttattagaaaatgggtaagagagaactgttctatttacagtcaaaatcagttgtgaccac |
200 |
Q |
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| T |
43416042 |
gttcgacacatgtccagtgaaaagttgagggttgactttgttattagaaaatgggtaagagagaactgttctatttacagtcaaaatcagttgtgaccac |
43415943 |
T |
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| Q |
201 |
tctctcttattcagttatttgttactacttacttccctatgctactc |
247 |
Q |
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| T |
43415942 |
tctctcttattcagttatttgttactacttacttccctttgccactc |
43415896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 106 - 208
Target Start/End: Complemental strand, 43401230 - 43401127
Alignment:
| Q |
106 |
acacatgtccagtgaaaagttgaggg-ttgactttgttattagaaaatgggtaagagagaactgttctatttacagtcaaaatcagttgtgaccactctc |
204 |
Q |
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| T |
43401230 |
acacatgtccaatgaaaagttgaggggttgactttgttattaaaaaatagataagagggaaccgttctgtttaaattcaaaatcagttgtgaccactctc |
43401131 |
T |
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| Q |
205 |
tctt |
208 |
Q |
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|||| |
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| T |
43401130 |
tctt |
43401127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 43403697 - 43403617
Alignment:
| Q |
36 |
ttgccatcatacaa--cttggttaatgagtcaatattgttccattccatgtaaatcaaatatagacagttcgacacatgtccagt |
118 |
Q |
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| T |
43403697 |
ttgccatcatacaattcttggctaacaagtcactgttgttccattccatgtaaatc----attgacagatcgacacatgtccagt |
43403617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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