View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1280_low_5 (Length: 544)
Name: NF1280_low_5
Description: NF1280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1280_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 30 - 367
Target Start/End: Original strand, 41191311 - 41191648
Alignment:
| Q |
30 |
gagacgaggctagagggacaaaataattagaagatgataaaaggtagggaaattctatgggaaaagcatcgaaaatgggtagtagtggaggcatgaatgg |
129 |
Q |
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| T |
41191311 |
gagacgaggctagagggacaaaataattagaagatgataaaaggtagggaaattctatgggaaaagcatcgaaaatgggtagtagtggaggcatgaatgg |
41191410 |
T |
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| Q |
130 |
atccatatgatgtaagttgacatttagtgacaaaaagggtgggtgctagtgttgtgcatttttaatgatgatgaaaaattatttgtgttttcatagtggc |
229 |
Q |
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| T |
41191411 |
atccatatgatgtaagttgacatttagtgacaaaaagggtgggtgctagtgttgtgcatttttaatgatgatgaaaaattatttgtgttttcatagtggc |
41191510 |
T |
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| Q |
230 |
acttggttttggtttccatgtgtttatggtagtgattgttgtgtgtgcatgtgtgaacaaacctttctatcatccatcactttgcatcttctatcccatg |
329 |
Q |
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| T |
41191511 |
acttggtttcggtttccatgtgtttatggtagtgattgttgtgtgtgcatgtgtgaacaaacctttctatcatccatcactttgcatcttctatcccatg |
41191610 |
T |
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| Q |
330 |
ctttgggtcccatgccctttcttcctcttcactcttac |
367 |
Q |
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| T |
41191611 |
ctttgggtcccattccctttcttcctcttcactcttac |
41191648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 413 - 526
Target Start/End: Original strand, 41192170 - 41192278
Alignment:
| Q |
413 |
tatttcacacttacttcattttcaacgtaactatagcacaagatgttctgaaatgcaacattgatgcggccattttcaatgacctgaatagtttaggtac |
512 |
Q |
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| T |
41192170 |
tatttcacacttatttcattttcaac-----tatagcacaagatgttctgaaatgcaacatcgatgcggccattttcaatgacctgaatagtttaggtac |
41192264 |
T |
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| Q |
513 |
atatatttgcatcc |
526 |
Q |
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| T |
41192265 |
atgtatttgcatcc |
41192278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 447 - 494
Target Start/End: Complemental strand, 22498083 - 22498036
Alignment:
| Q |
447 |
agcacaagatgttctgaaatgcaacattgatgcggccattttcaatga |
494 |
Q |
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| T |
22498083 |
agcacaaggtgttctgaaatgcaacgtcgacgcggccattttcaatga |
22498036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 521
Target Start/End: Complemental strand, 8618756 - 8618682
Alignment:
| Q |
447 |
agcacaagatgttctgaaatgcaacattgatgcggccattttcaatgacctgaatagtttaggtacatatatttg |
521 |
Q |
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|||||||| |||||||||||||||| | |||| || ||||||||||| | ||| ||||| ||||||| |||||| |
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| T |
8618756 |
agcacaaggtgttctgaaatgcaacgtcgatgtggaaattttcaatgagcagaagagttttggtacatgtatttg |
8618682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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