View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1280_low_7 (Length: 446)
Name: NF1280_low_7
Description: NF1280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1280_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 30 - 436
Target Start/End: Complemental strand, 13156052 - 13155645
Alignment:
| Q |
30 |
ccaaccattgccaaatgaaagatcaaatgctaccatacaagtcacatcccaaaaacagatgatcgacgcgttccaccaacccacaaccactcgaacacac |
129 |
Q |
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| T |
13156052 |
ccaaccattgccaaatgaaagatcaaatgctaccatacaagtcacatcccaaaaacagatgatcgacgcgttccaccaacccacaaccactcgaacacac |
13155953 |
T |
|
| Q |
130 |
attaaagttagttggaataatttcacgtcaaatcagattatccttcgttgatatgtgattgcgtaacaaatgccaaaccagtaaagaaaccttcaaatag |
229 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13155952 |
attaaagttagtcggaataatttcacgtcaaatcagattatccttcgttgatatgtgattgcgtaacaaatgtcaaaccagtaaagaaaccttcaaatag |
13155853 |
T |
|
| Q |
230 |
acatctttgtcctaaacgatatcaaatgtatcaaatcgatcaacctgctccacattaa--aaaatatatgagacacttcaaacgtatcatttacctggat |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
13155852 |
acatctttgtcctaaacgatatcaaatgtatcaaatcgatcaatctgctccacattaaaaaaaatatatgagacacttcaaacgtatcatttacctggat |
13155753 |
T |
|
| Q |
328 |
taagattacagtctcattttgtccaccccatcttgtnnnnnnnnntgctatgcaacaattgataacactcccccacttgctcctcctcccaaaataatat |
427 |
Q |
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||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13155752 |
taagattctagtctcattttgtccacaccatcttgt-aaaaaaaatgctatgcaacaattgataacactcccccacttgctcctcctcccaaaataatat |
13155654 |
T |
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| Q |
428 |
catcctttg |
436 |
Q |
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| T |
13155653 |
catcctttg |
13155645 |
T |
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