View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1281-Insertion-1 (Length: 340)

Name: NF1281-Insertion-1
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1281-Insertion-1
NF1281-Insertion-1
[»] chr4 (8 HSPs)
chr4 (8-340)||(12589788-12590120)
chr4 (8-340)||(25655224-25655556)
chr4 (8-340)||(46764383-46764715)
chr4 (88-340)||(11680407-11680659)
chr4 (88-340)||(11688686-11688938)
chr4 (88-229)||(52758423-52758562)
chr4 (8-53)||(11680763-11680808)
chr4 (8-53)||(11689042-11689087)
[»] chr6 (2 HSPs)
chr6 (8-340)||(931055-931387)
chr6 (8-340)||(10607904-10608237)
[»] chr3 (5 HSPs)
chr3 (88-244)||(38741443-38741598)
chr3 (88-183)||(46739898-46739993)
chr3 (151-244)||(46719841-46719933)
chr3 (88-143)||(46721331-46721386)
chr3 (152-189)||(37999640-37999677)
[»] chr1 (2 HSPs)
chr1 (88-229)||(49611273-49611412)
chr1 (88-143)||(43879063-43879118)
[»] scaffold0180 (1 HSPs)
scaffold0180 (88-187)||(22763-22862)
[»] chr7 (2 HSPs)
chr7 (88-188)||(29314824-29314924)
chr7 (88-188)||(41224548-41224648)
[»] chr8 (2 HSPs)
chr8 (89-188)||(41092415-41092514)
chr8 (271-340)||(42573710-42573777)
[»] chr5 (1 HSPs)
chr5 (152-189)||(42655082-42655119)


Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 8 - 340
Target Start/End: Original strand, 12589788 - 12590120
Alignment:
Q  8 ttattttggttaattagtagccagatattttgtattaagatgaaaataatgatgaaaaagattaacagtcatatgttctggatagagaaactaggaaacc 107  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12589788 ttattttggttaattagtagctagatattttgtattaagatgaaaataatgatgaaaaagattaacagtcatatgttctggatagagaaactaggaaacc 12589887  T
Q  108 aaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgatatagaaaccacatataagtctaatggtagtgt 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  12589888 aaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgatatagaaaccacatataagtctaatggtattgt 12589987  T
Q  208 ataagtgtggaattaaggaaaaatggaggtgtgagatcgtgtaactgttacggtagaagccacaattattatggttagaggttgctttgcttcaagagga 307  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12589988 ataagtgtggaattaaagaaaaatggaggtgtgagatcgtgtaactgttacggtagaagccacaattattatggttagaggttgctttgcttcaagagga 12590087  T
Q  308 aaagacacaaaggtagggggagaagggtggtgg 340  Q
    |||||||||||||||||||||||| ||||||||    
T  12590088 aaagacacaaaggtagggggagaaaggtggtgg 12590120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 8 - 340
Target Start/End: Original strand, 25655224 - 25655556
Alignment:
Q  8 ttattttggttaattagtagccagatattttgtattaagatgaaaataatgatgaaaaagattaacagtcatatgttctggatagagaaactaggaaacc 107  Q
    |||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25655224 ttattttggttaattaatagctagctattttgtattaagatgaaaataatgatgaaaaagattaacagtcatatgttctggatagagaaactaggaaacc 25655323  T
Q  108 aaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgatatagaaaccacatataagtctaatggtagtgt 207  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25655324 aaaaggttatggattttgtgagtataaggatgaagactaaaataaaagatgattcttttaatattgatatagaaaccacatataagtctaatggtattgt 25655423  T
Q  208 ataagtgtggaattaaggaaaaatggaggtgtgagatcgtgtaactgttacggtagaagccacaattattatggttagaggttgctttgcttcaagagga 307  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25655424 ataagtgtggaattaaagaaaaatggaggtgtgagatcgtgtaactgttacggtagaagctacaattattatggttagaggttgctttgcttcaagagga 25655523  T
Q  308 aaagacacaaaggtagggggagaagggtggtgg 340  Q
    |||||||||||||||||||||||||||||||||    
T  25655524 aaagacacaaaggtagggggagaagggtggtgg 25655556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 8 - 340
Target Start/End: Complemental strand, 46764715 - 46764383
Alignment:
Q  8 ttattttggttaattagtagccagatattttgtattaagatgaaaataatgatgaaaaagattaacagtcatatgttctggatagagaaactaggaaacc 107  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46764715 ttattttggttaattagtagctagatattttgtattaagatgaaaataatgatgaaaaagattaacagtcatatgttatggatagagaaactaggaaacc 46764616  T
Q  108 aaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgatatagaaaccacatataagtctaatggtagtgt 207  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  46764615 aaaaggttatggattttgtgagtataaggatgaagactaaaataaaagataattcttttaatattgatatagaaaccacatataagtctaatagtattgt 46764516  T
Q  208 ataagtgtggaattaaggaaaaatggaggtgtgagatcgtgtaactgttacggtagaagccacaattattatggttagaggttgctttgcttcaagagga 307  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  46764515 ataagtgtggaattaaagaaaaatggaggtgtgagatcgtgtaactgttacggtagaagctacaattattatggttagaggttgctttgcttcaagagga 46764416  T
Q  308 aaagacacaaaggtagggggagaagggtggtgg 340  Q
    ||||||||||||||| |||||||||||||||||    
T  46764415 aaagacacaaaggtatggggagaagggtggtgg 46764383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 88 - 340
Target Start/End: Complemental strand, 11680659 - 11680407
Alignment:
Q  88 gatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgatatagaaaccaca 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  11680659 gatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagattattcttttaacattgatatagaaaccaca 11680560  T
Q  188 tataagtctaatggtagtgtataagtgtggaattaaggaaaaatggaggtgtgagatcgtgtaactgttacggtagaagccacaattattatggttagag 287  Q
    ||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  11680559 tataagtttaatggtattgtataagtgtggaattaaagaaaaatggaggtgtgagatcgtgtaactgttactctagaagccacaattattatggttagag 11680460  T
Q  288 gttgctttgcttcaagaggaaaagacacaaaggtagggggagaagggtggtgg 340  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11680459 gttgctttgcttcaagaggaaaagacacaaaggtagggggagaaaggtggtgg 11680407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 88 - 340
Target Start/End: Complemental strand, 11688938 - 11688686
Alignment:
Q  88 gatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgatatagaaaccaca 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  11688938 gatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagattattcttttaacattgatatagaaaccaca 11688839  T
Q  188 tataagtctaatggtagtgtataagtgtggaattaaggaaaaatggaggtgtgagatcgtgtaactgttacggtagaagccacaattattatggttagag 287  Q
    ||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  11688838 tataagtttaatggtattgtataagtgtggaattaaagaaaaatggaggtgtgagatcgtgtaactgttactctagaagccacaattattatggttagag 11688739  T
Q  288 gttgctttgcttcaagaggaaaagacacaaaggtagggggagaagggtggtgg 340  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11688738 gttgctttgcttcaagaggaaaagacacaaaggtagggggagaaaggtggtgg 11688686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 88 - 229
Target Start/End: Original strand, 52758423 - 52758562
Alignment:
Q  88 gatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgatatagaaaccaca 187  Q
    |||||||| | ||| ||||||| || |||||||||||||||||||||||||||||| | | | |||||||||||||||||||||||||| ||||| ||||    
T  52758423 gatagagagattagaaaaccaatagattatggattttgtgagtataaggatgaagaattaaacaaaagatgattcttttaatattgatagagaaaacaca 52758522  T
Q  188 tataagtctaatggtagtgtataagtgtggaattaaggaaaa 229  Q
    |||  ||||| | ||| ||||||||||| ||||||| |||||    
T  52758523 tat--gtctatttgtactgtataagtgttgaattaaagaaaa 52758562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 11680808 - 11680763
Alignment:
Q  8 ttattttggttaattagtagccagatattttgtattaagatgaaaa 53  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  11680808 ttattttggttaattagtagctagatattttgtattaagatgaaaa 11680763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 11689087 - 11689042
Alignment:
Q  8 ttattttggttaattagtagccagatattttgtattaagatgaaaa 53  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  11689087 ttattttggttaattagtagctagatattttgtattaagatgaaaa 11689042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 8 - 340
Target Start/End: Complemental strand, 931387 - 931055
Alignment:
Q  8 ttattttggttaattagtagccagatattttgtattaagatgaaaataatgatgaaaaagattaacagtcatatgttctggatagagaaactaggaaacc 107  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  931387 ttattttggttaattagtagctagatattttgtattaagataaaaataatgatgaaaaagattaacagtcatatgttttggatagagaaactaggaaacc 931288  T
Q  108 aaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgatatagaaaccacatataagtctaatggtagtgt 207  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  931287 aaaaggttatgaattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgatatagaaaccacatataagtctaatggtattgt 931188  T
Q  208 ataagtgtggaattaaggaaaaatggaggtgtgagatcgtgtaactgttacggtagaagccacaattattatggttagaggttgctttgcttcaagagga 307  Q
    |||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  931187 ataagtgttgaattaaagaaaaatggaggtgtgtgatcgtgtaactgttacggtagaagccacaattattatggttagaggttgctttgcttcaagagga 931088  T
Q  308 aaagacacaaaggtagggggagaagggtggtgg 340  Q
    |||||||||||||||||||||||||||||||||    
T  931087 aaagacacaaaggtagggggagaagggtggtgg 931055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 8 - 340
Target Start/End: Original strand, 10607904 - 10608237
Alignment:
Q  8 ttattttggttaattagtagccagatattttgtattaagatgaaaataatgatgaaaaagattaacagtcatatgttctggatagagaaactaggaaacc 107  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10607904 ttattttggttaattagtagctagatgttttgtattaagatgaaaataatgatgaaaaagattaacagtcatatgttctggatagagaaactaggaaacc 10608003  T
Q  108 aaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattctttt-aatattgatatagaaaccacatataagtctaatggtagtg 206  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  10608004 aaaaggttatggattttgtgagtataaggatgaagactaaggtaaaagatgattctttttaatattgatatagaaaccacatataagtctaatggtattg 10608103  T
Q  207 tataagtgtggaattaaggaaaaatggaggtgtgagatcgtgtaactgttacggtagaagccacaattattatggttagaggttgctttgcttcaagagg 306  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10608104 tataagtgtggaattaaagaaaaatggaggtgtgagatcgtgtaactgttacggtagaagccacaattattatggttaaaggttgctttgcttcaagagg 10608203  T
Q  307 aaaagacacaaaggtagggggagaagggtggtgg 340  Q
    |||| ||||||| |||||||||||||||||||||    
T  10608204 aaaatacacaaatgtagggggagaagggtggtgg 10608237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 88 - 244
Target Start/End: Complemental strand, 38741598 - 38741443
Alignment:
Q  88 gatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgatatagaaaccaca 187  Q
    |||||||| | ||| ||| |||||||||||| ||||||||||||||| |||||||| | | ||||||||||||| |||||||||||||| |||||  |||    
T  38741598 gatagagagattagaaaatcaaaaggttatgaattttgtgagtataaagatgaagaattaaataaaagatgattattttaatattgatagagaaa--aca 38741501  T
Q  188 tataagtctaatggtagtgtataagtgtggaattaaggaaaa-atggaggtgtgagat 244  Q
     ||||||||| | ||| ||||||||||| ||||||| ||||| |||||| ||||||||    
T  38741500 cataagtctatttgtactgtataagtgttgaattaaagaaaagatggagttgtgagat 38741443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 46739993 - 46739898
Alignment:
Q  88 gatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgatatagaaac 183  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| | | | |||| ||||| ||||| ||||||||| ||||||    
T  46739993 gatagagaaacttggaaaccaaaatgttatggattttgtgagtataaggatgaagaattaaagaaaatatgatgcttttgatattgatagagaaac 46739898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 151 - 244
Target Start/End: Complemental strand, 46719933 - 46719841
Alignment:
Q  151 aaaagatgattcttttaatattgatatagaaaccacatataagtctaatggtagtgtataagtgtggaattaaggaaaa-atggaggtgtgagat 244  Q
    |||||||||||||||||||||||||| ||||| |||||||  ||||| | ||| ||||||||||| ||||||| ||||| |||||| ||||||||    
T  46719933 aaaagatgattcttttaatattgatagagaaaacacatat--gtctatttgtactgtataagtgttgaattaaagaaaagatggagttgtgagat 46719841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 46721386 - 46721331
Alignment:
Q  88 gatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaaga 143  Q
    |||||||| | ||| |||||||||||||||||||||||||||||||||||||||||    
T  46721386 gatagagagattagaaaaccaaaaggttatggattttgtgagtataaggatgaaga 46721331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 37999677 - 37999640
Alignment:
Q  152 aaagatgattcttttaatattgatatagaaaccacata 189  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  37999677 aaagatgattcttttaatattgatagagaaaacacata 37999640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 229
Target Start/End: Original strand, 49611273 - 49611412
Alignment:
Q  88 gatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgatatagaaaccaca 187  Q
    |||||||| | ||| |||||||||||||||| |||||||||||||||||||||||| | | | ||||||||| |||||||||||||||  |||||  |||    
T  49611273 gatagagatattagaaaaccaaaaggttatgaattttgtgagtataaggatgaagaattaaacaaaagatgaatcttttaatattgatcgagaaa--aca 49611370  T
Q  188 tataagtctaatggtagtgtataagtgtggaattaaggaaaa 229  Q
     ||||||||| ||||| || |||||||| ||||||| |||||    
T  49611371 cataagtctattggtactgaataagtgttgaattaaagaaaa 49611412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 43879118 - 43879063
Alignment:
Q  88 gatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaaga 143  Q
    |||||||||||| ||||||| || ||||| ||||| |||||||||| |||||||||    
T  43879118 gatagagaaactgggaaacctaagggttacggattctgtgagtatacggatgaaga 43879063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 187
Target Start/End: Original strand, 22763 - 22862
Alignment:
Q  88 gatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgatatagaaaccaca 187  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| | | | |||| ||||| ||||| ||||||||| ||||||||||    
T  22763 gatagagaaacttggaaaccaaaatgttatggattttgtgagtataaggatgaagaattaaagaaaatatgatgcttttgatattgatagagaaaccaca 22862  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 188
Target Start/End: Complemental strand, 29314924 - 29314824
Alignment:
Q  88 gatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgatatagaaaccaca 187  Q
    |||||| ||||||| |||||||||||| |||||||||||||||||||||||||||| |   | ||||||| |||||||| ||||||||| ||||| ||||    
T  29314924 gatagaaaaactagaaaaccaaaaggtcatggattttgtgagtataaggatgaagaattgaagaaaagattattcttttgatattgatagagaaaacaca 29314825  T
Q  188 t 188  Q
    |    
T  29314824 t 29314824  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 41224548 - 41224648
Alignment:
Q  88 gatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgatatagaaaccaca 187  Q
    |||||| ||||| | |||||||||||| |||||||||||||||||||||||||||| |   | ||||||| |||||||| ||||||||| ||||| ||||    
T  41224548 gatagaaaaactggaaaaccaaaaggtcatggattttgtgagtataaggatgaagaattgaagaaaagattattcttttgatattgatagagaaaacaca 41224647  T
Q  188 t 188  Q
    |    
T  41224648 t 41224648  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 188
Target Start/End: Complemental strand, 41092514 - 41092415
Alignment:
Q  89 atagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgatatagaaaccacat 188  Q
    ||||| ||||| | |||||||||||| |||||||||||||||||||||||||||| |   | ||||||| |||||||| ||||||||| ||||| |||||    
T  41092514 atagaaaaactggaaaaccaaaaggtcatggattttgtgagtataaggatgaagaattgaagaaaagattattcttttgatattgatagagaaaacacat 41092415  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 271 - 340
Target Start/End: Complemental strand, 42573777 - 42573710
Alignment:
Q  271 aattattatggttagaggttgctttgcttcaagaggaaaagacacaaaggtagggggagaagggtggtgg 340  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||  ||||||||||||    
T  42573777 aattactatggttagaggttgttttgcttcaagaggaaaagacacaaaggtaaggg--gaagggtggtgg 42573710  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 42655119 - 42655082
Alignment:
Q  152 aaagatgattcttttaatattgatatagaaaccacata 189  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  42655119 aaagatgattcttttaatattgatagagaaaacacata 42655082  T

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