View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1281-Insertion-10 (Length: 650)
Name: NF1281-Insertion-10
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281-Insertion-10 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 7 - 321
Target Start/End: Complemental strand, 3482350 - 3482036
Alignment:
| Q |
7 |
aactacacaggctacattttatttttggttaaatgatacttatttcatttcattaataataattattttgttgacaaagatttcaatccttgacgagaat |
106 |
Q |
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| T |
3482350 |
aactacaccggctacattttatttttggttaaatgatacttatttcatttcattaataataattattttgttgacaaagatttcaatccttgacgagaat |
3482251 |
T |
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| Q |
107 |
acagcagaatttagcatttggtggcagctgaagaaggtactatgttatatagtttcaatttctttgtatgttcactttggttggtatgcaatttctacta |
206 |
Q |
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| T |
3482250 |
acagcagaatttagcatttggtggcagctgaagaaggtactatgttatatagtttcaatttctttgtatgttcactttggttggtatgcaattcctgcta |
3482151 |
T |
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| Q |
207 |
ccataaatagcttcaaaagtggagtttccattaataaacaactagtatacatataataatcttaatgcacatgcttgcttacatttttgtcatatttgac |
306 |
Q |
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| T |
3482150 |
ccataaatagcttcaaaagtggagtttccattaataaacaactagtatacatataataatcttaatgcacatgcttgcttacatttttgtcatatttgac |
3482051 |
T |
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| Q |
307 |
ctcttaatgcacatg |
321 |
Q |
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| T |
3482050 |
ctcttaatgcacatg |
3482036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 362 - 647
Target Start/End: Complemental strand, 3481997 - 3481708
Alignment:
| Q |
362 |
atgcatgcatatgctgtcttctctctgtctctct----actgtctttctcctttgtagtacttgttttgtttacactgaatgcttttgactcctaagttg |
457 |
Q |
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| T |
3481997 |
atgcatgcatatgctgtcttctctctctctctctctctactgtctttctcctttgtagtacttgttttgtttacactgaatgcttttgactcctaagttg |
3481898 |
T |
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| Q |
458 |
aagagattcttcagatctgcatggaaaaacttttggacattgtcagcatcaactattcagctttttgttgattcctaaatgttgaagcttttcaacaatt |
557 |
Q |
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| T |
3481897 |
aagagattcttcagatctgcatggaaaaacttttggacattgtcagcatcaactattcagctttttgttgattcctaaatgttgaagcttttcaacaatt |
3481798 |
T |
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| Q |
558 |
cactctcatgatgattcagaataacatgtaagattggtttgcttttaatgtattcatgttgtaactgtttttgaatatgtgaatgtttta |
647 |
Q |
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| T |
3481797 |
cactctcatgatgattcagaataacatgtaagattggtttgcttttaatgtattcatgttgtaactgtttttgaatatgtgaatgtttta |
3481708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 381 - 516
Target Start/End: Complemental strand, 3457572 - 3457432
Alignment:
| Q |
381 |
tctctctgtctctctactgtctttctcctttgtagtacttgttttgtttaca-ctgaatgcttttgactcctaagttgaagagattcttcagatctgcat |
479 |
Q |
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||||||| |||||||||| ||| |||||| ||||||||||||| || || |||||||||||||||||| ||||||||||||||| | |||||| || |
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| T |
3457572 |
tctctctctctctctactttctctctcctcattagtacttgtttttgtttcagctgaatgcttttgactccaaagttgaagagattccttagatctacaa |
3457473 |
T |
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| Q |
480 |
gg-aaaaacttttggaca---ttgtcagcatcaactattca |
516 |
Q |
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| T |
3457472 |
ggaaaaaacttttgtacattgttgtcatcatcaactattca |
3457432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 546 - 611
Target Start/End: Complemental strand, 3457370 - 3457305
Alignment:
| Q |
546 |
ttttcaacaattcactctcatgatgattcagaataacatgtaagattggtttgcttttaatgtatt |
611 |
Q |
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||||||||||||||||||||| ||| |||| |||||||||||||| |||||| ||||||||||||| |
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| T |
3457370 |
ttttcaacaattcactctcatcatggttcacaataacatgtaagactggttttcttttaatgtatt |
3457305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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