View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1281-Insertion-6 (Length: 399)

Name: NF1281-Insertion-6
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1281-Insertion-6
NF1281-Insertion-6
[»] chr3 (1 HSPs)
chr3 (8-399)||(27687486-27687877)
[»] chr6 (1 HSPs)
chr6 (95-184)||(28987342-28987431)
[»] chr1 (3 HSPs)
chr1 (100-184)||(16971784-16971867)
chr1 (96-184)||(33197600-33197688)
chr1 (100-182)||(40211361-40211442)
[»] chr4 (2 HSPs)
chr4 (104-171)||(20610526-20610593)
chr4 (95-131)||(37914394-37914430)
[»] chr2 (1 HSPs)
chr2 (96-171)||(20940349-20940424)


Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 8 - 399
Target Start/End: Original strand, 27687486 - 27687877
Alignment:
Q  8 aaaccctcgtctggttaatgttcatgtaattcaccaaagannnnnnnnnnnngaccttcaataaagacatatgataaaataggttcaa--tttgatgcaa 105  Q
    |||||||| |||||||||||||||||||| ||||||||||            ||||||||||||||||||||||||||||||||| ||  ||||||||||    
T  27687486 aaaccctcatctggttaatgttcatgtaagtcaccaaagatgtttcttttttgaccttcaataaagacatatgataaaataggtttaaaatttgatgcaa 27687585  T
Q  106 aatatgacatataatataataaaaatcaactattagctatgaaaataatcgattatgtttgcaacacataaaatagtaannnnnnngtgtgtaaatctag 205  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||        ||   |||||||||    
T  27687586 aatatgacatataatatactaaaaatcaactattagctatgaaaataaacgattatgtttgaaacacataaaatagtattttttttgt---taaatctag 27687682  T
Q  206 ctaataaatcttattaaatttcttattaactaacaaataatatattaatgcaatattccttaaaaaagtttaatgcattatacaaat-nnnnnnnntgta 304  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||          |||    
T  27687683 ctaataaatattattaaatttcttattaactaacaaataatatattaatgcaatattccttaaaaaaatttaatgcattatacaaataaaaaaaaaagta 27687782  T
Q  305 ttaatatttatatatgtggtttgtcttgaatttgaaaaatgaatctaaaacccgaaccacacaattgttataaaagcacgaccaaacacatacaa 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||| |||||||| ||||||    
T  27687783 ttaatatttatatatgtggtttgtcttgaatttgaaaaatgaatctgaaaccccaaccatacaattgttataaaagcacaaccaaacatatacaa 27687877  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 95 - 184
Target Start/End: Original strand, 28987342 - 28987431
Alignment:
Q  95 atttgatgcaaaatatgacatataatataataaaaatcaactattagctatgaaaataatcgattatgtttgcaacacataaaatagtaa 184  Q
    |||||||||||||||| | || ||||||| ||||||| ||||||||| ||||| || ||||||||| ||||| |||  ||||||||||||    
T  28987342 atttgatgcaaaatataagatttaatatactaaaaattaactattaggtatgacaagaatcgattacgtttgaaacgtataaaatagtaa 28987431  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 16971867 - 16971784
Alignment:
Q  100 atgcaaaatatgacatataatataataaaaatcaactattagctatgaaaataatcgattatgtttgcaacacataaaatagtaa 184  Q
    ||||||||||| |||||||||||| ||||| | ||| |||||  | ||||| ||||||||||||||||||||||| |||||||||    
T  16971867 atgcaaaatataacatataatatactaaaatttaacaattaggaaggaaaa-aatcgattatgtttgcaacacatgaaatagtaa 16971784  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 96 - 184
Target Start/End: Complemental strand, 33197688 - 33197600
Alignment:
Q  96 tttgatgcaaaatatgacatataatataataaaaatcaactattagctatgaaaataatcgattatgtttgcaacacataaaatagtaa 184  Q
    |||||||| |||||| ||||||||||||  |||||| ||| |||||  | ||||| |||| |||||||||||| ||||| |||||||||    
T  33197688 tttgatgcgaaatataacatataatatacaaaaaattaacaattaggaaggaaaaaaatcaattatgtttgcaccacatgaaatagtaa 33197600  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 40211361 - 40211442
Alignment:
Q  100 atgcaaaatatgacatataatataataaaaatcaactattagctatgaaaataatcgattatgtttgcaacacataaaatagt 182  Q
    ||||||||||| |||||||||||| ||||||| ||| || ||  | ||||| |||||||||||||||| |||||| |||||||    
T  40211361 atgcaaaatataacatataatatactaaaaattaacaataaggaaggaaaa-aatcgattatgtttgcgacacatgaaatagt 40211442  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 20610526 - 20610593
Alignment:
Q  104 aaaatatgacatataatataataaaaatcaactattagctatgaaaataatcgattatgtttgcaaca 171  Q
    |||||||||||||||||||| ||||||  ||| ||||   |||||||||| |||||||||||| ||||    
T  20610526 aaaatatgacatataatatactaaaaaataacaattatggatgaaaataaacgattatgtttgaaaca 20610593  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 37914430 - 37914394
Alignment:
Q  95 atttgatgcaaaatatgacatataatataataaaaat 131  Q
    |||||||||||||||| |||||||||||| |||||||    
T  37914430 atttgatgcaaaatataacatataatatactaaaaat 37914394  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 20940349 - 20940424
Alignment:
Q  96 tttgatgcaaaatatgacatataatataataaaaatcaactattagctatgaaaataatcgattatgtttgcaaca 171  Q
    |||||||||||||||||||||| |||||   ||||| ||| || ||  ||||||||||| ||||||||||| ||||    
T  20940349 tttgatgcaaaatatgacatatgatatacccaaaattaacaatcaggaatgaaaataattgattatgtttgaaaca 20940424  T

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