View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1281-Insertion-9 (Length: 803)

Name: NF1281-Insertion-9
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1281-Insertion-9
NF1281-Insertion-9
[»] chr1 (3 HSPs)
chr1 (51-803)||(39210097-39210850)
chr1 (19-119)||(24036791-24036891)
chr1 (235-306)||(7673907-7673978)
[»] chr8 (5 HSPs)
chr8 (145-508)||(27510436-27510799)
chr8 (505-803)||(27510083-27510379)
chr8 (505-803)||(27271016-27271323)
chr8 (7-119)||(27513624-27513736)
chr8 (13-78)||(8675180-8675245)
[»] chr4 (4 HSPs)
chr4 (616-799)||(31949642-31949827)
chr4 (749-803)||(29707533-29707587)
chr4 (148-286)||(42091774-42091912)
chr4 (171-329)||(31949210-31949368)
[»] chr2 (2 HSPs)
chr2 (7-109)||(38950770-38950875)
chr2 (235-276)||(27592764-27592805)
[»] chr3 (1 HSPs)
chr3 (7-90)||(9461206-9461298)
[»] chr6 (2 HSPs)
chr6 (47-114)||(18331878-18331945)
chr6 (7-45)||(18331979-18332017)


Alignment Details
Target: chr1 (Bit Score: 650; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 51 - 803
Target Start/End: Original strand, 39210097 - 39210850
Alignment:
Q  51 ttgattgttttgaactaatttgaatatgaatagattagattccaatgttgtgagtgtagaatatatattataatggatgctccatttgatgtatacaaga 150  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  39210097 ttgatttttttgaactaatttgaatatgaatagattagattccaatgttgtgagtgtagaatatatattataatggaggttccatttgatgtatacaaga 39210196  T
Q  151 atgagtttgaggtggctgtcaaaaagaggaacgagaaagtctattttaccgacggttggacattttttaaagaattttatcgacttttggctggtacttg 250  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||   |||||||||||||||||    
T  39210197 atgactttgaggtggctgtcaaaaagaggaacgtgaaagtctattttactgacggttggacattttt-aaagaattttatgtgcttttggctggtacttg 39210295  T
Q  251 gatcactgtcatttttgcaaatcgacacctttttctgtttgaagttaggaatatgcatggagatgagttggtgtatcctcaaagcactcctccacaaaga 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39210296 gatcactgtcatttttgcaaatcgacacctttttctgtttgaagttaggaatatgcatggagatgagttggtgtatcctcaaagcactcctccacaaaga 39210395  T
Q  351 atgttgttgcagaaccatagtgctcatgcttacgttaatccattcataccatatggtttttctgcccttttacttcccactaccttc---tataacacaa 447  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||   ||||||||||    
T  39210396 atgttgttgcagaaccatagtgctcatgcttacgt-aatcccttcataccatatggttcttctgcccttttacttcccactaccttcttctataacacaa 39210494  T
Q  448 ttgttaaggagttaaccgcttctgacgttacttttggaatgttggtgagttgtatgattgtctatatgcagaatttgaattggcttgacttttgtcaatc 547  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39210495 ttgttaaggagttaaccgcttctgacgttacttttggaatgttggtgagttgtatgattgtctatatgcagaatttgaattggcttgacttttgtcaatc 39210594  T
Q  548 tgcatttcgggctgagaaaattgaattaactgtcattgattgcctgggaatacttgaaagttgttaacggatttttgtcatgatgaacagttgtcatgtg 647  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||| |||||||||||    
T  39210595 tgcatttcaggctgagaaaattgaattaactgtcattgattgcctggaaatacttggaagttgtttacggatttttgtcatgatgaacggttgtcatgtg 39210694  T
Q  648 ttttttctggtgaatggcaagcattgtgcagcgcgcgtaagttgattgaaggagcaaagatcaaattaggtgtcacaggagcagctaagaataaggttgt 747  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  39210695 ttttttctggtgaatggcaagcattgtgcagcgcgcataagttgattgaaggagcaaagatcaaattaggtgtcacaggagcagctaacaatagggttgt 39210794  T
Q  748 ctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaa 803  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39210795 ctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaa 39210850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 24036891 - 24036791
Alignment:
Q  19 cctgatgatgaagaggttgagttttttgaattttgattgttttgaactaa-tttgaatatgaatagattagattccaatgttgtgagtgtagaatatata 117  Q
    ||||||||||||||||||||||||||| | ||||||||||||||| |||| |||| |||| |||| || ||||| ||||||| |||||||||||||||||    
T  24036891 cctgatgatgaagaggttgagtttttt-agttttgattgttttgatctaaatttgtatataaataaatcagatttcaatgttttgagtgtagaatatata 24036793  T
Q  118 tt 119  Q
    ||    
T  24036792 tt 24036791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 235 - 306
Target Start/End: Complemental strand, 7673978 - 7673907
Alignment:
Q  235 ttttggctggtacttggatcactgtcatttttgcaaatcgacacctttttctgtttgaagttaggaatatgc 306  Q
    ||||||||||||||||| ||||  | |||||| ||||||||||| ||||||||||||||||||| |||||||    
T  7673978 ttttggctggtacttgggtcacaattattttttcaaatcgacacatttttctgtttgaagttagaaatatgc 7673907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 145 - 508
Target Start/End: Complemental strand, 27510799 - 27510436
Alignment:
Q  145 acaagaatgagtttgaggtggctgtcaaaaagaggaacgagaaagtctattttaccgacggttggacattttttaaagaatttta-tcgacttttggctg 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | | ||||||||||    
T  27510799 acaagaatgagtttgaggtggctgtcaaaaagaggaacgagaaagtctattttactgacggttggacattttt-aaagaattttaatgggcttttggctg 27510701  T
Q  244 gtacttggatcactgtcatttttgcaaatcgacacctttttctgtttgaagttaggaatatgcatggagatgagttggtgtatcctcaaagcactcctcc 343  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27510700 gtacttggatcactgtcatttttgaaaatcgacacctttttctgtttgaagttaggaatatacatggagatgagttggtgtatcctcaaagcactcctcc 27510601  T
Q  344 acaaagaatgttgttgcagaaccatagtgctcatgcttacgttaatccattcataccatatggtttttctgcccttttacttcccactaccttctataac 443  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||| | |||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  27510600 acaaagaatgttgttgcagaaccatagtgctcatgcgtacgtaaattccttcataccatatggttcttctgcccttttacttcccactaccttttataac 27510501  T
Q  444 acaattgttaaggagttaaccgcttctgacgttacttttggaatgttggtgagttgtatgattgt 508  Q
    ||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27510500 acaattgattaggagttaacctcttctgacgttacttttggaatgttggtgagttgtatgattgt 27510436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 505 - 803
Target Start/End: Complemental strand, 27510379 - 27510083
Alignment:
Q  505 ttgtctatatgcagaatttgaattggcttgacttttgtcaatctgcatttcgggctgagaaaattgaattaactgtcattgattgcctggga-atacttg 603  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||  |||||||    
T  27510379 ttgtctatatgcagaatttgaattggcttggcttttgtcaatctgcatttcgggctgggaaaactgaatcaactgtcattgattgcctgggctatacttg 27510280  T
Q  604 aaagttgttaacggatttttgtcatgatgaacagttgtcatgtgttttttctggtgaatggcaagcattgtgcagcgcgcgtaagttgattgaaggagca 703  Q
     |||||||| |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27510279 gaagttgtttacggatttttgtcatga---acagttgtcatgtgttttttctggtgaatggcaagcattgtgcagcgcgcgtaagttgattgaaggagca 27510183  T
Q  704 aagatcaaattaggtgtcacaggagcagctaagaataaggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaa 803  Q
    |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27510182 aagatcaaattaggtgtcacgggagcagctaacaatagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaa 27510083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 505 - 803
Target Start/End: Original strand, 27271016 - 27271323
Alignment:
Q  505 ttgtctatatgcagaatttgaattggcttgacttttgtcaatctgcatttcgggctgagaaaattgaattaactgtcattgattgcctgggaat-acttg 603  Q
    |||||||| |||| |||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||  | |||||    
T  27271016 ttgtctatgtgcataatttgaattggcttggcttttgtcaatctgcatttccggctgtgaaaactgaattaactgtcattgatttcctgggctttacttg 27271115  T
Q  604 aaagttgttaacggatttttgtcatgatgaacagttgtcatgtgttttttctggtgaatggcaagcattgtgcagcgcgcgtaagttgattgaaggagca 703  Q
     |||||||| | ||| || |||||| |||||||| ||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  27271116 gaagttgtttatggaattctgtcataatgaacagctgtcatgtgatttttctggtgaatggcaaacattgtgcaacgcgcgtaagttgattgaaggagca 27271215  T
Q  704 aagatcaaattaggtgtcacaggagcagctaaga--------ataaggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctcc 795  Q
    || ||||||||||||||||| ||||||||||| |        ||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  27271216 aatatcaaattaggtgtcacgggagcagctaacaatggggacatagggttgtctatcattgtgcgcctccaatgttggtgttgagaacaaaaatgcctcc 27271315  T
Q  796 atctgcaa 803  Q
    ||| ||||    
T  27271316 atcagcaa 27271323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 7 - 119
Target Start/End: Complemental strand, 27513736 - 27513624
Alignment:
Q  7 actatctgcaagcctgatgatgaagaggttgagttttttgaattttgattgttttgaactaatttgaatatgaatagattagattccaatgttgtgagtg 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  27513736 actacctgcaagcctgatgatgaagaggttgagttttttgaattttgagtgttttgaactaatttgaatatgaatagattagatttcaatgatgtgagtg 27513637  T
Q  107 tagaatatatatt 119  Q
    |||||||||||||    
T  27513636 tagaatatatatt 27513624  T

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Target: chr8; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 8675180 - 8675245
Alignment:
Q  13 tgcaagcctgatgatgaagaggttgagttttttgaattttgattgttttgaactaatttgaatatg 78  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||    
T  8675180 tgcaagcctgatgatgaagaggttgagttttttaaattttgattgttttgacctaatttcaatatg 8675245  T

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Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 616 - 799
Target Start/End: Original strand, 31949642 - 31949827
Alignment:
Q  616 ggatttttgtcatgatgaacagttgtcatgtgttttttctggtgaatggcaagcattgtg--cagcgcgcgtaagttgattgaaggagcaaagatcaaat 713  Q
    |||||| ||||||||| || | ||||| ||||| ||||||||||| |||| | |  ||||  || ||| ||||||||||| | ||||  ||||||||||     
T  31949642 ggatttctgtcatgatcaagatttgtcttgtgtattttctggtgagtggccacctctgtgtgcaacgcccgtaagttgatggcaggaataaagatcaaac 31949741  T
Q  714 taggtgtcacaggagcagctaagaataaggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatct 799  Q
    | |||||||| ||||||| ||  ||||||||||| ||||| ||||| ||||||||||||||| |||  |||||| |||||||||||    
T  31949742 ttggtgtcacgggagcagatagcaataaggttgtgtatctatgtgcacctccaatgttggtgttgaagacaaaattgcctccatct 31949827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 749 - 803
Target Start/End: Complemental strand, 29707587 - 29707533
Alignment:
Q  749 tatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaa 803  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29707587 tatcattgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaa 29707533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 148 - 286
Target Start/End: Complemental strand, 42091912 - 42091774
Alignment:
Q  148 agaatgagtttgaggtggctgtcaaaaagaggaacgagaaagtctattttaccgacggttggacattttttaaagaattttatc-gacttttggctggta 246  Q
    |||||||| ||||||| |||||  |||||||||||| |||||| ||||||   || |||||| | | |||| |||||||||  | |  |||||||||||     
T  42091912 agaatgagattgaggtagctgtggaaaagaggaacgggaaagtttattttgatgatggttgggc-tgttttgaagaatttttacaggattttggctggtt 42091814  T
Q  247 cttggatcactgtcatttttgcaaatcgacacctttttct 286  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  42091813 cttggatcactgtcatttttgcaaatcgacgcctttttct 42091774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 329
Target Start/End: Original strand, 31949210 - 31949368
Alignment:
Q  171 aaaaagaggaacgagaaagtctattttaccgacggttggacattttttaaagaatttta-tcgacttttggctggtacttggatcactgtcatttttgca 269  Q
    ||||||| ||||| ||  || |||||||| || |||||||||||||| |||||  |||| | |  |||||| |||| ||||||||||  | |||||||||    
T  31949210 aaaaagaagaacgggagggtttattttactgatggttggacattttt-aaagagctttaatgggattttgggtggtgcttggatcacaattatttttgca 31949308  T
Q  270 aatcgacacctttttctgtttgaagttaggaatatgcatggagatgagttggtgtatcct 329  Q
    |||||||| ||||||||| | |  || || ||| ||||||||| | | ||||||||||||    
T  31949309 aatcgacatctttttctgatggtggtaagaaatctgcatggagtttaattggtgtatcct 31949368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 38950875 - 38950770
Alignment:
Q  7 actatctgcaagcctgatgatgaagaggttgagttttttg------aattttgattgttttgaactaatttgaatatgaatagattagattccaatgttg 100  Q
    ||||||||||||||||||||   ||||||||||||||||       ||||||||||||||||| ||||||||||||||| ||||||||||| ||| ||||    
T  38950875 actatctgcaagcctgatga---agaggttgagtttttttttttttaattttgattgttttgacctaatttgaatatgattagattagatttcaaagttg 38950779  T
Q  101 tgagtgtag 109  Q
    |||||||||    
T  38950778 tgagtgtag 38950770  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 27592764 - 27592805
Alignment:
Q  235 ttttggctggtacttggatcactgtcatttttgcaaatcgac 276  Q
    |||||| |||| |||||| |||||||||||||||||||||||    
T  27592764 ttttggttggttcttggaccactgtcatttttgcaaatcgac 27592805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 9461206 - 9461298
Alignment:
Q  7 actatctgcaagcctgatgatgaagaggttgagttttt---------tgaattttgattgttttgaactaatttgaatatgaatagattagat 90  Q
    ||||||||||||||||||||||||||||||||||||||         | ||||||||||||||||| ||||||||||||||| ||||||||||    
T  9461206 actatctgcaagcctgatgatgaagaggttgagtttttttttttttgttaattttgattgttttgacctaatttgaatatgattagattagat 9461298  T

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Target: chr6 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 18331945 - 18331878
Alignment:
Q  47 aattttgattgttttgaactaatttgaatatgaatagattagattccaatgttgtgagtgtagaatat 114  Q
    |||||||||||||||||  |||||||||||||| ||||||||||| |||| |||||||||||||||||    
T  18331945 aattttgattgttttgacataatttgaatatgattagattagatttcaatattgtgagtgtagaatat 18331878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 18332017 - 18331979
Alignment:
Q  7 actatctgcaagcctgatgatgaagaggttgagtttttt 45  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  18332017 actatctacaagcctgatgatgaagaggttgagtttttt 18331979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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