View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12810_high_2 (Length: 535)
Name: NF12810_high_2
Description: NF12810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12810_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 16 - 518
Target Start/End: Complemental strand, 29520134 - 29519629
Alignment:
| Q |
16 |
ccattgatctctctacttgcaacaaacaacacggttcgtggtactactagtttagtttagtttagtagtaagtagattggtcgttgaggttattaaacaa |
115 |
Q |
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| T |
29520134 |
ccattgatctctctacttgcaacaaacaacaaggttcgtggtactactagtttagtttagtttagtagtaagtagattggtcgttgaggttattaaacaa |
29520035 |
T |
|
| Q |
116 |
catttcaccggtgagaatttaatacacccaatcttatgttatgttatgtcccaaatataaaggtgatggagtacctgctatttcccaaactatttattca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29520034 |
catttcaccggtgagaatttaatacacccaatcttatgttatgt-----cccaaatataaaggtgatggagtacctgctatttcccaaactattcattca |
29519940 |
T |
|
| Q |
216 |
tgcttttcttccctcttcccaaactaatcctaatttccttcctagcctcatactataccttcctcattaattcttctttcttcttatctcaatcatatta |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29519939 |
tgcttttcttccctcttcccaaactaatcctaatttccttcctagcctcatactataccttcctcattaattcttctttcttcttatctcaatcatattt |
29519840 |
T |
|
| Q |
316 |
tattcatcccacacgttatcttcatttgtatatatat------------acacatcaaggaaaaaataatttataataacttagagctttcaatcaagag |
403 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
29519839 |
tattcatcccacacgttatcttcatttgtatatatatatatatatatacacacatcaaggaaaaaata----ataatagcttagagctttcaatcaagag |
29519744 |
T |
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| Q |
404 |
agatttatttgattgttctcttcagaatcaaaatggtgggtattttctcgttggttacgggcatggctggaccaagtggatttggatcctctacaacagc |
503 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29519743 |
agatttatttgattattctcttcagaatcaaaatggtgggtattttctcgttggttacgggcatggctggaccaagtggatttggatcctctacaacagc |
29519644 |
T |
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| Q |
504 |
tgaacaagttactca |
518 |
Q |
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||||||||||||||| |
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| T |
29519643 |
tgaacaagttactca |
29519629 |
T |
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