View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12810_high_8 (Length: 286)
Name: NF12810_high_8
Description: NF12810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12810_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 53983032 - 53982767
Alignment:
| Q |
16 |
gaatttcccaaattacattaagtctatgtgtagagattttaaactcacaactgtgcgcaaagtccttcgttcttaattgtttgagtaatccaagtgaaac |
115 |
Q |
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| T |
53983032 |
gaatttcccaaattacattaagtctatgtgtagagattttaaactcacaactgtgcgcaaagtccttcattcttaattgtttgagtaatccaagtgaaac |
53982933 |
T |
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| Q |
116 |
tctttctatgaataacattgacaacgatatgtttatataattttaaaatgacttaataatttctaatgttgtgttcattcatttagcatcattcctcggc |
215 |
Q |
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| T |
53982932 |
tctttctatgaataacattgacaacgatatgtttatataattttaaaatgacttaataatttctaatgttgtgttcattcatttagcatcattcctcggc |
53982833 |
T |
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| Q |
216 |
ggatcaatgtatgagtgtatttaaaggtcctcataatccaattgtgacaggctgacctatgcttct |
281 |
Q |
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| T |
53982832 |
ggatcaatgtatgagtgtatttaaaggtcctcataatccaattgtgacaggctgacctattcttct |
53982767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 54000985 - 54000921
Alignment:
| Q |
192 |
attcatttagcatcattcctcggcggatcaatgtatgagtgtatttaaaggtcctcataatccaa |
256 |
Q |
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| T |
54000985 |
attcattcagcattattcctcggcagatcaatgtatgagtgcatttaaaggtcctcttgatccaa |
54000921 |
T |
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