View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12810_low_12 (Length: 208)
Name: NF12810_low_12
Description: NF12810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12810_low_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 506105 - 506312
Alignment:
| Q |
1 |
cacacacctcatcttaaaagtcggttttgtaaagatgagttaagttctataaaaaacttaataatggccgcatgagctggatttcggttgtgactaatga |
100 |
Q |
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| T |
506105 |
cacacacctcatcttaaaagtcggttttgtaaagatgagttaagttatataaaaaacttaataatggccacatgagctggatttcggttgtgactaatga |
506204 |
T |
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| Q |
101 |
aacaactgatttggaacagatacagtagcccaacaagaattgtggtcctaaccagtgtgtgtattatactaaaggtgttattaggtttggacaacagttt |
200 |
Q |
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| T |
506205 |
aacaattgatttggaacagatgcagtagcccaacaagaattgtggtcctaaccagtgtgtgtattatactaaaggtgttattaggtttggagaacagttt |
506304 |
T |
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| Q |
201 |
gttgtatc |
208 |
Q |
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|||||||| |
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| T |
506305 |
gttgtatc |
506312 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 38036063 - 38036023
Alignment:
| Q |
7 |
cctcatcttaaaagtcggttttgtaaagatgagttaagttc |
47 |
Q |
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| T |
38036063 |
cctcaccttacaagtcggttttgtaaagttgagttaagttc |
38036023 |
T |
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