View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12810_low_3 (Length: 534)
Name: NF12810_low_3
Description: NF12810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12810_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 165 - 471
Target Start/End: Complemental strand, 22328167 - 22327861
Alignment:
| Q |
165 |
tggtgttgaagaacatgtagctgtggggttccaagcggggaggtgagcgagttcgtcgatagcagatttagcttttttaatgagccaatcaactgcttta |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22328167 |
tggtgttgaagaacatgtagctgtggggttccaagcggggaggtgagcgagttcgtcgatagcagatttagcttttttaatgagccaatcgactgcttta |
22328068 |
T |
|
| Q |
265 |
cttggccggtcgtagccgagacgatcttgcacgtcgtagaattgaatcgcagtgtgggctgagagtcgtacacggcggtcacggggacctttcgcggtgc |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22328067 |
cttggccggtcgtagccgagacgatcttgcacgtcgtagaattgaatcgcagtgtgggctgagagtcgtacacggcggtcacggggacctttcgcggtgc |
22327968 |
T |
|
| Q |
365 |
aaactttactgtgacggtctttccgtcctgttgaacggacaatgtgacctccttgtacctccacgatttctcctcctcctccgctgctgctgattctctt |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22327967 |
aaactttactgtgacggtctttccgtcctgttgaacggacaatgtgacctccttgtacctccacgatttctcctcctcctccgctgctgctgattctctt |
22327868 |
T |
|
| Q |
465 |
cgacgag |
471 |
Q |
| |
|
||||||| |
|
|
| T |
22327867 |
cgacgag |
22327861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 22328315 - 22328188
Alignment:
| Q |
14 |
gttgttgggaaggaaattgttgttcgtgtggtggcattcttcgctctaatgccgctgagcggtgactggtagaagcggttactggattgttgtccaccgg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22328315 |
gttgttgggaaggaaattgttgttcgtgtggtggcattcttcgctctaatgccgctgagcggtgactggtagaagcggttactggattgttgtccaccgg |
22328216 |
T |
|
| Q |
114 |
agattgccggtgaaacatttcatttgtt |
141 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
22328215 |
agattgccggtgaaacatttcatttgtt |
22328188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 226 - 359
Target Start/End: Original strand, 39077281 - 39077414
Alignment:
| Q |
226 |
gcagatttagcttttttaatgagccaatcaactgctttacttggccggtcgtagccgagacgatcttgcacgtcgtagaattgaatcgcagtgtgggctg |
325 |
Q |
| |
|
||||| ||||| ||||| || ||||||||||| |||||||| || | ||||||||||||||| ||||| || || ||||||||||| || ||||| |||| |
|
|
| T |
39077281 |
gcagacttagcctttttgataagccaatcaacagctttactcggtctgtcgtagccgagacggtcttgaacatcatagaattgaattgctgtgtgtgctg |
39077380 |
T |
|
| Q |
326 |
agagtcgtacacggcggtcacggggacctttcgc |
359 |
Q |
| |
|
| | ||| ||||| || ||||| ||||||||||| |
|
|
| T |
39077381 |
ataatcgaacacgtcgatcacgaggacctttcgc |
39077414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 437
Target Start/End: Complemental strand, 32506585 - 32506380
Alignment:
| Q |
232 |
ttagcttttttaatgagccaatcaactgctttacttggccggtcgtagccgagacgatcttgcacgtcgtagaattgaatcgcagtgtgggctgagagtc |
331 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||| |||| || |||| || |||||||| || ||||| |||| ||| || || ||||| ||||| | |
|
|
| T |
32506585 |
ttagctttattaatgagccaatcaagtgctttactgggcctatcaaagcccagtcgatcttgaacatcgtaaaattcaatagcggtatgggccgagagac |
32506486 |
T |
|
| Q |
332 |
gtacacggcggtcacggggacctttcgcggtgcaaactttactgtgacggtctttccgtcctgttgaacggacaatgtgacctccttgtacctccacgat |
431 |
Q |
| |
|
| || || | ||| | || |||||||| |||||||||||||| ||||| ||||| || ||| |||| | | |||||||||||| | || ||||| || |
|
|
| T |
32506485 |
gaacgcgtctgtctctcggccctttcgccgtgcaaactttactatgacgatcttttcgacctcttgaccttataatgtgacctccgtcaacttccactat |
32506386 |
T |
|
| Q |
432 |
ttctcc |
437 |
Q |
| |
|
|||||| |
|
|
| T |
32506385 |
ttctcc |
32506380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 235 - 386
Target Start/End: Original strand, 30768316 - 30768467
Alignment:
| Q |
235 |
gcttttttaatgagccaatcaactgctttacttggccggtcgtagccgagacgatcttgcacgtcgtagaattgaatcgcagtgtgggctgagagtcgta |
334 |
Q |
| |
|
||||| || ||||||||||| |||||||| ||||| | |||||||||||| |||||||| || |||||||||| || || ||||| ||||||||||| | |
|
|
| T |
30768316 |
gctttcttgatgagccaatccactgctttgcttggtctgtcgtagccgaggcgatcttgaacatcgtagaattcgatggctgtgtgtgctgagagtcgaa |
30768415 |
T |
|
| Q |
335 |
cacggcggtcacggggacctttcgcggtgcaaactttactgtgacggtcttt |
386 |
Q |
| |
|
| | ||| || || |||||||| | ||| |||| || |||||||| ||||| |
|
|
| T |
30768416 |
ccctgcgatcgcgaggaccttttgatgtgtaaaccttgctgtgacgatcttt |
30768467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University