View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12810_low_4 (Length: 445)

Name: NF12810_low_4
Description: NF12810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12810_low_4
NF12810_low_4
[»] chr1 (25 HSPs)
chr1 (213-431)||(3943587-3943805)
chr1 (214-431)||(41959633-41959850)
chr1 (214-431)||(9589455-9589672)
chr1 (260-431)||(13984447-13984618)
chr1 (214-342)||(44227848-44227976)
chr1 (214-255)||(284333-284374)
chr1 (214-271)||(284553-284610)
chr1 (214-271)||(321846-321903)
chr1 (214-255)||(3943060-3943101)
chr1 (214-255)||(9588670-9588711)
chr1 (214-255)||(23045515-23045556)
chr1 (214-275)||(24771906-24771967)
chr1 (214-255)||(41959078-41959119)
chr1 (215-255)||(27211200-27211240)
chr1 (225-255)||(52037356-52037386)
chr1 (214-255)||(321626-321667)
chr1 (214-255)||(13985003-13985044)
chr1 (214-271)||(23045279-23045336)
chr1 (214-255)||(24772141-24772182)
chr1 (213-242)||(30701952-30701981)
chr1 (214-275)||(33082960-33083021)
chr1 (214-271)||(40783657-40783714)
chr1 (214-255)||(40783893-40783934)
chr1 (214-255)||(47038086-47038127)
chr1 (214-242)||(17305954-17305982)
[»] chr5 (11 HSPs)
chr5 (214-431)||(15304822-15305039)
chr5 (213-255)||(15305224-15305266)
chr5 (213-255)||(25773648-25773690)
chr5 (214-255)||(12807089-12807130)
chr5 (214-255)||(30720728-30720769)
chr5 (208-255)||(16983252-16983299)
chr5 (213-271)||(36561098-36561156)
chr5 (214-271)||(12806853-12806910)
chr5 (214-271)||(30720492-30720549)
chr5 (214-255)||(36561335-36561376)
chr5 (214-271)||(40886610-40886667)
[»] chr6 (14 HSPs)
chr6 (214-431)||(19996322-19996539)
chr6 (214-255)||(15064930-15064971)
chr6 (214-255)||(1605579-1605620)
chr6 (214-255)||(7761301-7761342)
chr6 (206-255)||(13757200-13757249)
chr6 (214-255)||(29260192-29260233)
chr6 (214-271)||(29260412-29260469)
chr6 (214-271)||(1605798-1605855)
chr6 (213-270)||(7761521-7761578)
chr6 (214-255)||(8626482-8626523)
chr6 (214-271)||(8626702-8626759)
chr6 (214-255)||(17942443-17942484)
chr6 (214-255)||(19996727-19996768)
chr6 (208-252)||(31559732-31559776)
[»] chr3 (25 HSPs)
chr3 (214-431)||(19911998-19912215)
chr3 (214-431)||(44276775-44276992)
chr3 (214-445)||(12095232-12095464)
chr3 (214-418)||(38806178-38806382)
chr3 (258-423)||(4227369-4227540)
chr3 (283-423)||(4236415-4236562)
chr3 (214-255)||(38805245-38805286)
chr3 (213-271)||(13365063-13365121)
chr3 (214-255)||(198855-198896)
chr3 (214-255)||(12094582-12094623)
chr3 (214-271)||(19241668-19241725)
chr3 (214-255)||(29375138-29375179)
chr3 (214-255)||(36881282-36881323)
chr3 (214-255)||(13364843-13364884)
chr3 (214-255)||(19241904-19241945)
chr3 (214-255)||(19911509-19911550)
chr3 (214-255)||(27707400-27707441)
chr3 (214-271)||(29375352-29375409)
chr3 (214-271)||(36881500-36881557)
chr3 (214-255)||(43750137-43750178)
chr3 (214-255)||(44277467-44277508)
chr3 (214-271)||(46694110-46694167)
chr3 (214-255)||(46694346-46694387)
chr3 (214-242)||(20765196-20765224)
chr3 (214-242)||(39866375-39866403)
[»] scaffold0257 (2 HSPs)
scaffold0257 (214-431)||(23696-23913)
scaffold0257 (213-255)||(23466-23508)
[»] chr8 (26 HSPs)
chr8 (214-431)||(45278013-45278229)
chr8 (214-431)||(41305762-41305979)
chr8 (260-431)||(10647118-10647289)
chr8 (205-255)||(45278713-45278763)
chr8 (214-255)||(3585451-3585492)
chr8 (214-255)||(8697910-8697951)
chr8 (214-271)||(11646325-11646382)
chr8 (214-255)||(27034997-27035038)
chr8 (214-271)||(36068300-36068357)
chr8 (214-255)||(40918965-40919006)
chr8 (214-255)||(41307973-41308014)
chr8 (214-255)||(43275633-43275674)
chr8 (213-255)||(11174459-11174501)
chr8 (214-255)||(2540167-2540208)
chr8 (214-271)||(7147133-7147190)
chr8 (214-255)||(10646592-10646633)
chr8 (214-255)||(11646561-11646602)
chr8 (214-271)||(30999524-30999581)
chr8 (214-255)||(36068080-36068121)
chr8 (214-255)||(37345571-37345612)
chr8 (214-271)||(40058303-40058360)
chr8 (214-255)||(40058539-40058580)
chr8 (214-255)||(40486465-40486506)
chr8 (214-271)||(40918731-40918788)
chr8 (214-271)||(43275399-43275456)
chr8 (214-242)||(132251-132279)
[»] chr7 (11 HSPs)
chr7 (220-431)||(25059456-25059667)
chr7 (214-431)||(2910859-2911076)
chr7 (214-255)||(10981508-10981549)
chr7 (214-255)||(25060145-25060186)
chr7 (214-255)||(27813811-27813852)
chr7 (216-255)||(36453360-36453399)
chr7 (213-255)||(40348959-40349001)
chr7 (214-255)||(2911560-2911601)
chr7 (214-255)||(25614587-25614628)
chr7 (214-271)||(27814031-27814088)
chr7 (214-255)||(47110451-47110492)
[»] chr2 (15 HSPs)
chr2 (208-431)||(34222052-34222275)
chr2 (17-198)||(45112021-45112202)
chr2 (213-255)||(1102502-1102544)
chr2 (214-255)||(3518908-3518949)
chr2 (214-255)||(12969975-12970016)
chr2 (214-255)||(34224390-34224431)
chr2 (214-271)||(39938390-39938447)
chr2 (215-255)||(23366790-23366830)
chr2 (212-255)||(37673973-37674016)
chr2 (204-242)||(11841583-11841621)
chr2 (213-255)||(39938169-39938211)
chr2 (214-271)||(1646507-1646564)
chr2 (214-275)||(12969740-12969801)
chr2 (214-271)||(22388138-22388195)
chr2 (214-271)||(23367009-23367066)
[»] chr4 (19 HSPs)
chr4 (221-425)||(19362019-19362223)
chr4 (221-417)||(20543325-20543521)
chr4 (210-255)||(34324819-34324864)
chr4 (209-255)||(12071556-12071602)
chr4 (214-255)||(14261044-14261085)
chr4 (214-255)||(21310425-21310466)
chr4 (206-271)||(24706239-24706304)
chr4 (214-255)||(25704651-25704692)
chr4 (214-255)||(40122721-40122762)
chr4 (214-284)||(44569044-44569114)
chr4 (214-271)||(12071780-12071837)
chr4 (214-271)||(14261264-14261321)
chr4 (214-271)||(21310641-21310698)
chr4 (214-255)||(21661771-21661812)
chr4 (214-255)||(21670535-21670576)
chr4 (214-255)||(22321503-22321544)
chr4 (214-255)||(24706483-24706524)
chr4 (214-271)||(25704871-25704928)
chr4 (214-242)||(17610280-17610308)
[»] scaffold0054 (2 HSPs)
scaffold0054 (214-275)||(45669-45730)
scaffold0054 (214-255)||(45454-45495)
[»] scaffold1431 (1 HSPs)
scaffold1431 (214-255)||(135-176)


Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 213 - 431
Target Start/End: Complemental strand, 3943805 - 3943587
Alignment:
Q  213 gtactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctatttta 312  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3943805 gtactccctccgtttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctatttta 3943706  T
Q  313 cccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactc 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3943705 cccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactc 3943606  T
Q  413 tcccaataaattattttcc 431  Q
    |||||| ||||||||||||    
T  3943605 tcccaagaaattattttcc 3943587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 214 - 431
Target Start/End: Complemental strand, 41959850 - 41959633
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttac 313  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41959850 tactccctccgtttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 41959751  T
Q  314 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  41959750 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgactcaattttaagtagatttactcatacactct 41959651  T
Q  414 cccaataaattattttcc 431  Q
     |||| ||||||||||||    
T  41959650 tccaagaaattattttcc 41959633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 214 - 431
Target Start/End: Complemental strand, 9589672 - 9589455
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttac 313  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||| || |||||||||||||||||    
T  9589672 tactccctccgtttcaaaatacatgtctattttagagaaattttttgtttcaaaatacatatccatttcatagtttaagtatgcattttgtctattttac 9589573  T
Q  314 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 413  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  9589572 ccttgtctaccaattaattgaattctagattttctccacaataattattttccactaataaatgttgacctaattttaagtagatttactcctgcactct 9589473  T
Q  414 cccaataaattattttcc 431  Q
    ||||| ||||||||||||    
T  9589472 cccaagaaattattttcc 9589455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 260 - 431
Target Start/End: Original strand, 13984447 - 13984618
Alignment:
Q  260 gtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttacccttgtctaccaattaattggattctagattttctccacaataatt 359  Q
    |||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13984447 gtttcaaaatacatatccatttcatagtttaaggatacatgttgtctattttacccttgtctaccaattaattggattctagattttctccacaataatt 13984546  T
Q  360 attttccactaataaatgttgacccaattttaagtagatttactcatgcactctcccaataaattattttcc 431  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13984547 attttccactaataaatgttgatccaattttaagtagatttactcatgcactctcccaagaaattattttcc 13984618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 214 - 342
Target Start/End: Original strand, 44227848 - 44227976
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttac 313  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||   ||| |||||||||||||||||||||||||||||||    
T  44227848 tactccctccgtttcaaaatacatgtccattttggagaaattttttgtttcaaaatgcatgtcattttgatagtttaaggatacattttgtctattttac 44227947  T
Q  314 ccttgtctaccaattaattggattctaga 342  Q
    |||||| |||||| |||||||||||||||    
T  44227948 ccttgtataccaactaattggattctaga 44227976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 284333 - 284374
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  284333 tactccctccgtttcaaaatacatgtccattttggagaaatt 284374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 284610 - 284553
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    |||||||||||||| | ||||| ||||||||||||||||   ||||||||||||||||    
T  284610 tactccctccgtttcataatacttgtccattttagagaataattttgtttcaaaatac 284553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 321903 - 321846
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    |||||||||||||| | ||||| ||||||||||||||||  ||||||||||| |||||    
T  321903 tactccctccgtttcataatacttgtccattttagagaatatttttgtttcacaatac 321846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 3943060 - 3943101
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  3943060 tactccctccgtttcaaaatacatgtccattttggagaaatt 3943101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 9588670 - 9588711
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  9588670 tactccctccgtttcaaaatacatgtccattttggagaaatt 9588711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 23045556 - 23045515
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  23045556 tactccctccgtttcaaaatacatgtccattttggagaaatt 23045515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 275
Target Start/End: Original strand, 24771906 - 24771967
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgt 275  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||||||    
T  24771906 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacatgt 24771967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 41959078 - 41959119
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  41959078 tactccctccgtttcaaaatacatgtccattttggagaaatt 41959119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 27211240 - 27211200
Alignment:
Q  215 actccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    ||||||||||||| |||||||||||||||||| ||||||||    
T  27211240 actccctccgtttcaaaatacatgtccattttggagaaatt 27211200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 52037386 - 52037356
Alignment:
Q  225 ttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||||||||||||||||||||    
T  52037386 ttttaaaatacatgtccattttagagaaatt 52037356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 321626 - 321667
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| ||||||||||| |||||| ||||||||    
T  321626 tactccctccgtttcaaaatacatgttcattttggagaaatt 321667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 13985044 - 13985003
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||| ||||||| |||||||||||||||||| ||||||||    
T  13985044 tactccatccgtttcaaaatacatgtccattttggagaaatt 13985003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 23045279 - 23045336
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  23045279 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 23045336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 24772182 - 24772141
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| ||||||||||||||||||  |||||||    
T  24772182 tactccctccgtttcaaaatacatgtccattttgaagaaatt 24772141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 242
Target Start/End: Complemental strand, 30701981 - 30701952
Alignment:
Q  213 gtactccctccgttttaaaatacatgtcca 242  Q
    ||||||||||||||||||||||||||||||    
T  30701981 gtactccctccgttttaaaatacatgtcca 30701952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 33083021 - 33082960
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgt 275  Q
    |||||||||||||| | ||||| ||||||||||| ||||   |||||||||| |||||||||    
T  33083021 tactccctccgtttcataatacttgtccattttaaagaataattttgtttcacaatacatgt 33082960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 40783657 - 40783714
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  40783657 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 40783714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 40783934 - 40783893
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| ||||||||||| |||||| ||||||||    
T  40783934 tactccctccgtttcaaaatacatgttcattttggagaaatt 40783893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 47038127 - 47038086
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||| ||||||| |||||||||||||||||| ||||||||    
T  47038127 tactccatccgtttcaaaatacatgtccattttggagaaatt 47038086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 242
Target Start/End: Original strand, 17305954 - 17305982
Alignment:
Q  214 tactccctccgttttaaaatacatgtcca 242  Q
    |||||||||||||||||||||||||||||    
T  17305954 tactccctccgttttaaaatacatgtcca 17305982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 214 - 431
Target Start/End: Original strand, 15304822 - 15305039
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttac 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15304822 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 15304921  T
Q  314 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 413  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15304922 ccttatctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 15305021  T
Q  414 cccaataaattattttcc 431  Q
    ||||| ||||||||||||    
T  15305022 cccaagaaattattttcc 15305039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 15305266 - 15305224
Alignment:
Q  213 gtactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    ||||||||||||||| |||||||||||||||||| ||||||||    
T  15305266 gtactccctccgtttcaaaatacatgtccattttggagaaatt 15305224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 25773648 - 25773690
Alignment:
Q  213 gtactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    ||||||||||||||| |||||||||||||||||| ||||||||    
T  25773648 gtactccctccgtttcaaaatacatgtccattttggagaaatt 25773690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 12807130 - 12807089
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  12807130 tactccctccgtttcaaaatacatgtccattttggagaaatt 12807089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 30720769 - 30720728
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  30720769 tactccctccgtttcaaaatacatgtccattttggagaaatt 30720728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 16983252 - 16983299
Alignment:
Q  208 aaatggtactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    ||||| ||||||||| |||| |||||||||||||||||| ||||||||    
T  16983252 aaatgatactccctctgtttcaaaatacatgtccattttggagaaatt 16983299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 36561098 - 36561156
Alignment:
Q  213 gtactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    ||||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  36561098 gtactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 36561156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 12806853 - 12806910
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  12806853 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 12806910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 30720492 - 30720549
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  30720492 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 30720549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 36561376 - 36561335
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||| ||||||| ||||||||||||||||||||| |||||    
T  36561376 tactccatccgtttcaaaatacatgtccattttagaaaaatt 36561335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 40886610 - 40886667
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  40886610 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 40886667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 214 - 431
Target Start/End: Original strand, 19996322 - 19996539
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttac 313  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19996322 tactccctccgtttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 19996421  T
Q  314 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19996422 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatattgacccaattttaagtagatttactcatgcactct 19996521  T
Q  414 cccaataaattattttcc 431  Q
    ||||| ||||||||||||    
T  19996522 cccaagaaattattttcc 19996539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 15064971 - 15064930
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  15064971 tactccctccgtttcaaaatacatgtccattttagagaaatt 15064930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 1605579 - 1605620
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  1605579 tactccctccgtttcaaaatacatgtccattttggagaaatt 1605620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 7761301 - 7761342
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  7761301 tactccctccgtttcaaaatacatgtccattttggagaaatt 7761342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 13757200 - 13757249
Alignment:
Q  206 ttaaatggtactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    ||||||| ||||| |||||||| |||||||||||||||||| ||||||||    
T  13757200 ttaaatgatactctctccgtttcaaaatacatgtccattttggagaaatt 13757249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 29260192 - 29260233
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  29260192 tactccctccgtttcaaaatacatgtccattttggagaaatt 29260233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 29260469 - 29260412
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    |||||||||||||| | ||||| ||||||||||||||||   ||||||||||||||||    
T  29260469 tactccctccgtttcataatacttgtccattttagagaataattttgtttcaaaatac 29260412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 1605855 - 1605798
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  1605855 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 1605798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 7761578 - 7761521
Alignment:
Q  213 gtactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaata 270  Q
    ||||||||||||||| | ||||| ||||||||||||||||   |||||||||| ||||    
T  7761578 gtactccctccgtttcataatacttgtccattttagagaataattttgtttcacaata 7761521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 8626482 - 8626523
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| ||||||||||||||||||  |||||||    
T  8626482 tactccctccgtttcaaaatacatgtccattttgaagaaatt 8626523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 8626759 - 8626702
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  8626759 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 8626702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 17942443 - 17942484
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||| ||||| |||||||||||||||||| ||||||||    
T  17942443 tactcccttcgtttcaaaatacatgtccatttttgagaaatt 17942484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 19996768 - 19996727
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||| ||||| ||||||||    
T  19996768 tactccctccgtttcaaaatacatgtctattttggagaaatt 19996727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 31559732 - 31559776
Alignment:
Q  208 aaatggtactccctccgttttaaaatacatgtccattttagagaa 252  Q
    |||||||||||||||||||| | ||||| | ||||||||||||||    
T  31559732 aaatggtactccctccgtttcataatacttctccattttagagaa 31559776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 214 - 431
Target Start/End: Complemental strand, 19912215 - 19911998
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttac 313  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19912215 tactccctccgtttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 19912116  T
Q  314 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19912115 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 19912016  T
Q  414 cccaataaattattttcc 431  Q
     |||| ||||||||||||    
T  19912015 tccaagaaattattttcc 19911998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 214 - 431
Target Start/End: Original strand, 44276775 - 44276992
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttac 313  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44276775 tactctctccgtttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 44276874  T
Q  314 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44276875 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 44276974  T
Q  414 cccaataaattattttcc 431  Q
    ||||| ||||||||||||    
T  44276975 cccaagaaattattttcc 44276992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 214 - 445
Target Start/End: Complemental strand, 12095464 - 12095232
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttac 313  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||    
T  12095464 tactccctccgtttcaaaatatatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatgcattttatctattttac 12095365  T
Q  314 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 413  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12095364 ccttgtctaccaattaattggattctagattttcttcacaataattattttccactaataaatgtagacccaattttaagtagatttactcatgcactct 12095265  T
Q  414 cccaataaattattttcctatg-ctactccact 445  Q
    ||||| |||||||||||| ||| ||||||||||    
T  12095264 cccaagaaattattttcccatgactactccact 12095232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 214 - 418
Target Start/End: Complemental strand, 38806382 - 38806178
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttac 313  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  38806382 tactccctccgtttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtctatttcatagtttaaggatacattttgtctattttac 38806283  T
Q  314 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 413  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38806282 ccttgtctaccaattaattggattctagattttctccataataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 38806183  T
Q  414 cccaa 418  Q
    |||||    
T  38806182 cccaa 38806178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 258 - 423
Target Start/End: Complemental strand, 4227540 - 4227369
Alignment:
Q  258 ttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttacccttgtctaccaattaattggattctagattttctccacaataa 357  Q
    |||||| ||||||||||||  ||| ||| |||||||||||||||||| ||||||||||||| |||| |||||||||||||||| ||||||||||||||||    
T  4227540 ttgtttaaaaatacatgtatttttgataatttaaggatacattttgtatattttacccttgcctac-aattaattggattctaaattttctccacaataa 4227442  T
Q  358 ttattttccactaataaa-------tgttgacccaattttaagtagatttactcatgcactctcccaataaat 423  Q
    ||||||||||||||||||       |||||  |||||||||||| |||||| ||||||| |||||||| ||||    
T  4227441 ttattttccactaataaatataatgtgttggtccaattttaagtggatttattcatgcagtctcccaagaaat 4227369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 283 - 423
Target Start/End: Complemental strand, 4236562 - 4236415
Alignment:
Q  283 atagtttaaggatacattttgtctattttacccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaa------- 375  Q
    |||||||||||||||||||| | ||||||||||||| ||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||           
T  4236562 atagtttaaggatacattttatatattttacccttgccttgcaattaattggattctaaattttctccacaataattattttccactaataaatataatg 4236463  T
Q  376 tgttgacccaattttaagtagatttactcatgcactctcccaataaat 423  Q
    |||||  |||||||||||| |||||| |||||||||||||||| ||||    
T  4236462 tgttggtccaattttaagtggatttattcatgcactctcccaagaaat 4236415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 38805245 - 38805286
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  38805245 tactccctccgttttaaaatacatgtccattttagagaaatt 38805286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 271
Target Start/End: Complemental strand, 13365121 - 13365063
Alignment:
Q  213 gtactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    ||||||||||||||| | ||||| ||||||||||||||||   ||||||||||||||||    
T  13365121 gtactccctccgtttcataatacttgtccattttagagaataattttgtttcaaaatac 13365063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 198855 - 198896
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  198855 tactccctccgtttcaaaatacatgtccattttggagaaatt 198896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 12094582 - 12094623
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  12094582 tactccctccgtttcaaaatacatgtccattttggagaaatt 12094623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 19241668 - 19241725
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    |||||||||||||| | ||||| ||||||||||||||||   ||||||||||||||||    
T  19241668 tactccctccgtttcataatacttgtccattttagagaataattttgtttcaaaatac 19241725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 29375138 - 29375179
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  29375138 tactccctccgtttcaaaatacatgtccattttggagaaatt 29375179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 36881282 - 36881323
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  36881282 tactccctccgtttcaaaatacatgtccattttggagaaatt 36881323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 13364843 - 13364884
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| ||||||||||| |||||| ||||||||    
T  13364843 tactccctccgtttcaaaatacatgttcattttggagaaatt 13364884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 19241945 - 19241904
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||| | ||||||    
T  19241945 tactccctccgtttcaaaatacatgtccattttggtgaaatt 19241904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 19911509 - 19911550
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| ||||||||||| |||||| ||||||||    
T  19911509 tactccctccgtttcaaaatacatgttcattttggagaaatt 19911550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 27707441 - 27707400
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    ||||||||||||||  ||||||||||||||||| ||||||||    
T  27707441 tactccctccgtttcgaaatacatgtccattttggagaaatt 27707400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 29375409 - 29375352
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  29375409 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 29375352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 36881557 - 36881500
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  36881557 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 36881500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 43750137 - 43750178
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||| ||||| |||||||||||||||||| ||||||||    
T  43750137 tactcccttcgtttcaaaatacatgtccattttggagaaatt 43750178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 44277508 - 44277467
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||| ||||| ||||||||    
T  44277508 tactccctccgtttcaaaatacatgtctattttggagaaatt 44277467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 46694110 - 46694167
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  46694110 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 46694167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 46694387 - 46694346
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| ||||||||||||| |||| ||||||||    
T  46694387 tactccctccgtttcaaaatacatgtcctttttggagaaatt 46694346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 242
Target Start/End: Original strand, 20765196 - 20765224
Alignment:
Q  214 tactccctccgttttaaaatacatgtcca 242  Q
    |||||||||||||||||||||||||||||    
T  20765196 tactccctccgttttaaaatacatgtcca 20765224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 242
Target Start/End: Complemental strand, 39866403 - 39866375
Alignment:
Q  214 tactccctccgttttaaaatacatgtcca 242  Q
    |||||||||||||||||||||||||||||    
T  39866403 tactccctccgttttaaaatacatgtcca 39866375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 214 - 431
Target Start/End: Complemental strand, 23913 - 23696
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttac 313  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23913 tactccatccgtttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 23814  T
Q  314 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23813 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatattgacccaattttaagtagatttactcatgcactct 23714  T
Q  414 cccaataaattattttcc 431  Q
    ||||| ||||||||||||    
T  23713 cccaagaaattattttcc 23696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 23466 - 23508
Alignment:
Q  213 gtactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    ||||||||||||||| |||||||||||||||||| ||||||||    
T  23466 gtactccctccgtttcaaaatacatgtccattttggagaaatt 23508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 214 - 431
Target Start/End: Original strand, 45278013 - 45278229
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttac 313  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  45278013 tactccctc-gtttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 45278111  T
Q  314 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45278112 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 45278211  T
Q  414 cccaataaattattttcc 431  Q
    ||||| ||||||||||||    
T  45278212 cccaagaaattattttcc 45278229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 214 - 431
Target Start/End: Original strand, 41305762 - 41305979
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttac 313  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  41305762 tactctctccgtttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatatattttgtctattttac 41305861  T
Q  314 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41305862 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 41305961  T
Q  414 cccaataaattattttcc 431  Q
    || || ||||||||||||    
T  41305962 cctaagaaattattttcc 41305979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 260 - 431
Target Start/End: Complemental strand, 10647289 - 10647118
Alignment:
Q  260 gtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttacccttgtctaccaattaattggattctagattttctccacaataatt 359  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10647289 gtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttacccttgtctaccaattaattggattctagattttctccacaataatt 10647190  T
Q  360 attttccactaataaatgttgacccaattttaagtagatttactcatgcactctcccaataaattattttcc 431  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  10647189 attttccactaataaatgttgacccaattttaagtagatttactcatgcactctcctaagaaattattttcc 10647118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 45278763 - 45278713
Alignment:
Q  205 tttaaatggtactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||  |||||||||||||| |||||||||||||||||| ||||||||    
T  45278763 tttaaatattactccctccgtttcaaaatacatgtccattttggagaaatt 45278713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 3585451 - 3585492
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  3585451 tactccctccgtttcaaaatacatgtccattttggagaaatt 3585492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 8697951 - 8697910
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  8697951 tactccctccgtttcaaaatacatgtccattttggagaaatt 8697910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 11646325 - 11646382
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    |||||||||||||| | ||||| ||||||||||||||||   ||||||||||||||||    
T  11646325 tactccctccgtttcataatacttgtccattttagagaataattttgtttcaaaatac 11646382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 27034997 - 27035038
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  27034997 tactccctccgtttcaaaatacatgtccattttggagaaatt 27035038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 36068357 - 36068300
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    |||||||||||||| | ||||| ||||||||||||||||   ||||||||||||||||    
T  36068357 tactccctccgtttcataatacttgtccattttagagaataattttgtttcaaaatac 36068300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 40919006 - 40918965
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  40919006 tactccctccgtttcaaaatacatgtccattttggagaaatt 40918965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 41308014 - 41307973
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  41308014 tactccctccgtttcaaaatacatgtccattttggagaaatt 41307973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 43275674 - 43275633
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  43275674 tactccctccgtttcaaaatacatgtccattttggagaaatt 43275633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 11174501 - 11174459
Alignment:
Q  213 gtactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    ||||||||||||||| ||||||||||| |||||| ||||||||    
T  11174501 gtactccctccgtttcaaaatacatgttcattttggagaaatt 11174459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 2540208 - 2540167
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||| ||||||||| |||||||||||||||||| ||||||||    
T  2540208 tacttcctccgtttcaaaatacatgtccattttggagaaatt 2540167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 7147190 - 7147133
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  7147190 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 7147133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 10646592 - 10646633
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||| ||||||||| |||||||||||||||||| ||||||||    
T  10646592 tacttcctccgtttcaaaatacatgtccattttggagaaatt 10646633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 11646602 - 11646561
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||| ||||| |||||||||||||||||| ||||||||    
T  11646602 tactcccttcgtttcaaaatacatgtccattttggagaaatt 11646561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 30999524 - 30999581
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  30999524 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 30999581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 36068080 - 36068121
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||| ||| ||||    
T  36068080 tactccctccgtttcaaaatacatgtccattttggaggaatt 36068121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 37345571 - 37345612
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| ||||||||||||||||||  |||||||    
T  37345571 tactccctccgtttcaaaatacatgtccattttgaagaaatt 37345612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 40058303 - 40058360
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  40058303 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 40058360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 40058580 - 40058539
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||  ||||||||    
T  40058580 tactccctccgtttcaaaatacatgtccatttcggagaaatt 40058539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 40486506 - 40486465
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| ||||||||||||||||||  |||||||    
T  40486506 tactccctccgtttcaaaatacatgtccattttgaagaaatt 40486465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 40918731 - 40918788
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  40918731 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 40918788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 43275399 - 43275456
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  43275399 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 43275456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 242
Target Start/End: Complemental strand, 132279 - 132251
Alignment:
Q  214 tactccctccgttttaaaatacatgtcca 242  Q
    |||||||||||||||||||||||||||||    
T  132279 tactccctccgttttaaaatacatgtcca 132251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 220 - 431
Target Start/End: Original strand, 25059456 - 25059667
Alignment:
Q  220 ctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttacccttgt 319  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25059456 ctccgtttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttacccttgt 25059555  T
Q  320 ctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactctcccaat 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  25059556 ctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagcagatttactcatgcactctcccaag 25059655  T
Q  420 aaattattttcc 431  Q
    ||||||||||||    
T  25059656 aaattattttcc 25059667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 214 - 431
Target Start/End: Original strand, 2910859 - 2911076
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttac 313  Q
    |||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2910859 tactccctccgtttcaaaatacatgtctattttaaagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 2910958  T
Q  314 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2910959 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 2911058  T
Q  414 cccaataaattattttcc 431  Q
     |||| ||||||||||||    
T  2911059 tccaaaaaattattttcc 2911076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 10981508 - 10981549
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  10981508 tactccctccgtttcaaaatacatgtccattttggagaaatt 10981549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 25060186 - 25060145
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  25060186 tactccctccgtttcaaaatacatgtccattttggagaaatt 25060145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 27813811 - 27813852
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  27813811 tactccctccgtttcaaaatacatgtccattttggagaaatt 27813852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 255
Target Start/End: Complemental strand, 36453399 - 36453360
Alignment:
Q  216 ctccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||| |||||||||||||||||| ||||||||    
T  36453399 ctccctccgtttcaaaatacatgtccattttggagaaatt 36453360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 40348959 - 40349001
Alignment:
Q  213 gtactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    ||||||| ||||||| |||||||||||||||||| ||||||||    
T  40348959 gtactccttccgtttcaaaatacatgtccattttggagaaatt 40349001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 2911601 - 2911560
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||| ||| |||||||||||||||||| ||||||||    
T  2911601 tactccctccatttcaaaatacatgtccattttggagaaatt 2911560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 25614628 - 25614587
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||| ||||||| |||||||||||||||||| ||||||||    
T  25614628 tactccttccgtttcaaaatacatgtccattttggagaaatt 25614587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 27814088 - 27814031
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  27814088 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 27814031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 47110451 - 47110492
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||| ||| |||||||||||||||||| ||||||||    
T  47110451 tactccctccatttcaaaatacatgtccattttggagaaatt 47110492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 208 - 431
Target Start/End: Original strand, 34222052 - 34222275
Alignment:
Q  208 aaatggtactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtcta 307  Q
    |||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  34222052 aaatagtactccttccgttttaaaatacatgtccattttatagaaattttttgtttcaaaatacatgtccatttcataatttaaggatacattttgtcta 34222151  T
Q  308 ttttacccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatg 407  Q
    ||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34222152 ttttacccttgtctatcaattaattgaattttagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatg 34222251  T
Q  408 cactctcccaataaattattttcc 431  Q
    ||||||||||| ||||||||||||    
T  34222252 cactctcccaagaaattattttcc 34222275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 45112202 - 45112021
Alignment:
Q  17 attatgtatataggtaggttgcgttaccgtatcaagaggccaaatattttcccatgagaactgctccataattagaaagtgctagatatga--gagactc 114  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  45112202 attatgtatataggtaggttgcattaccgtatcaagaggccaaatattttcccatgagaactgctccataattagaaagtgctagatatgagagagactc 45112103  T
Q  115 tcgagtcaaatgaggataaatcaagtgataaatactaaacccttcnnnnnnnggaaggttagcaggtgctttcgggcactaatt 198  Q
    ||||||||||||||||||||||||||||| | |||||||||||||       ||||||||||||||||||||||||||||||||    
T  45112102 tcgagtcaaatgaggataaatcaagtgat-agtactaaacccttc-aaaaaaggaaggttagcaggtgctttcgggcactaatt 45112021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 1102502 - 1102544
Alignment:
Q  213 gtactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    ||||||||||||||| |||||||||||||||||| ||||||||    
T  1102502 gtactccctccgtttcaaaatacatgtccattttggagaaatt 1102544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 3518908 - 3518949
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  3518908 tactccctccgtttcaaaatacatgtccattttggagaaatt 3518949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 12970016 - 12969975
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  12970016 tactccctccgtttcaaaatacatgtccattttggagaaatt 12969975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 34224431 - 34224390
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  34224431 tactccctccgtttcaaaatacatgtccattttggagaaatt 34224390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 39938447 - 39938390
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    |||||||||||||||| ||||| ||||||||||||||||   |||||||||| |||||    
T  39938447 tactccctccgttttataatacttgtccattttagagaataattttgtttcacaatac 39938390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 23366790 - 23366830
Alignment:
Q  215 actccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    ||||||||||||| |||||||||||||||||| ||||||||    
T  23366790 actccctccgtttcaaaatacatgtccattttggagaaatt 23366830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 37674016 - 37673973
Alignment:
Q  212 ggtactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||||| ||||||||||| |||||| ||||||||    
T  37674016 ggtactccctccgtttcaaaatacatgttcattttggagaaatt 37673973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 11841583 - 11841621
Alignment:
Q  204 ttttaaatggtactccctccgttttaaaatacatgtcca 242  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  11841583 ttttaaatgttactccctccgtttcaaaatacatgtcca 11841621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 39938169 - 39938211
Alignment:
Q  213 gtactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    ||||||||||||||| |||||||||| ||||||| ||||||||    
T  39938169 gtactccctccgtttcaaaatacatgaccattttggagaaatt 39938211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 1646564 - 1646507
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  1646564 tactccctccgtttcataatacctgtccattttagagaataattttgtttcacaatac 1646507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 275
Target Start/End: Original strand, 12969740 - 12969801
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgt 275  Q
    |||||||||||||| | ||||| |||||||||| |||||   |||||||||| |||||||||    
T  12969740 tactccctccgtttcataatacttgtccattttggagaataattttgtttcacaatacatgt 12969801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 22388138 - 22388195
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  22388138 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 22388195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 23367066 - 23367009
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  23367066 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 23367009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 141; Significance: 9e-74; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 221 - 425
Target Start/End: Complemental strand, 19362223 - 19362019
Alignment:
Q  221 tccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttacccttgtc 320  Q
    ||||||| ||||||||||||||||||||||||||||||||||  |||||||||||   ||| |||||||||||||||||||||||||||||||| |||||    
T  19362223 tccgtttcaaaatacatgtccattttagagaaattttttgttgtaaaatacatgtcattttgatagtttaaggatacattttgtctattttaccattgtc 19362124  T
Q  321 taccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactctcccaata 420  Q
    ||||||||||||||||||||||| |||||| ||||||||||||| ||| | ||||||||||||||||||||||| ||||||||||||||||||||| | |    
T  19362123 taccaattaattggattctagatgttctcctcaataattattttacaccagtaaatgttgacccaattttaagtggatttactcatgcactctccctaga 19362024  T
Q  421 aatta 425  Q
    |||||    
T  19362023 aatta 19362019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 221 - 417
Target Start/End: Complemental strand, 20543521 - 20543325
Alignment:
Q  221 tccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcatagtttaaggatacattttgtctattttacccttgtc 320  Q
    |||||||||||||| |||||  ||||  ||||| |||||||||||||||||||||   ||| ||||||||||||||||||||||||||| |||||||| |    
T  20543521 tccgttttaaaataaatgtcgtttttgaagaaagtttttgtttcaaaatacatgtcattttgatagtttaaggatacattttgtctattctacccttgcc 20543422  T
Q  321 taccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactctccca 417  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||    
T  20543421 taccaattaattggattctagattttctccataataattattttccattaataaatgttgacccaattttaagtggatttactcatgcactttccca 20543325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 34324864 - 34324819
Alignment:
Q  210 atggtactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||    
T  34324864 atggtactccctccgtttcaaaatacatgtccattttggagaaatt 34324819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 12071556 - 12071602
Alignment:
Q  209 aatggtactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||| |||||||||||||| |||||||||||||||||| ||||||||    
T  12071556 aatgatactccctccgtttcaaaatacatgtccattttggagaaatt 12071602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 14261044 - 14261085
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  14261044 tactccctccgtttcaaaatacatgtccattttggagaaatt 14261085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 21310425 - 21310466
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  21310425 tactccctccgtttcaaaatacatgtccattttggagaaatt 21310466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 24706239 - 24706304
Alignment:
Q  206 ttaaatggtactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    ||||||| |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  24706239 ttaaatgatactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 24706304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 25704651 - 25704692
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  25704651 tactccctccgtttcaaaatacatgtccattttggagaaatt 25704692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 40122762 - 40122721
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  40122762 tactccctccgtttcaaaatacatgtccattttggagaaatt 40122721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 44569114 - 44569044
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtacatttcat 284  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| ||||| ||| | ||||||    
T  44569114 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacttgtccctttcat 44569044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 12071837 - 12071780
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  12071837 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 12071780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 14261321 - 14261264
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  14261321 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 14261264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 21310698 - 21310641
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  21310698 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 21310641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 21661812 - 21661771
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||| ||| |||||||||||||||||| ||||||||    
T  21661812 tactccctccctttcaaaatacatgtccattttggagaaatt 21661771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 21670576 - 21670535
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||| ||| |||||||||||||||||| ||||||||    
T  21670576 tactccctccctttcaaaatacatgtccattttggagaaatt 21670535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 22321544 - 22321503
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||| ||||||| |||||||||||||||||| ||||||||    
T  22321544 tactccttccgtttcaaaatacatgtccattttggagaaatt 22321503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 24706524 - 24706483
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||| ||||||| |||||||||||||||||| ||||||||    
T  24706524 tactccatccgtttcaaaatacatgtccattttggagaaatt 24706483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 25704928 - 25704871
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatac 271  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||    
T  25704928 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatac 25704871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 242
Target Start/End: Original strand, 17610280 - 17610308
Alignment:
Q  214 tactccctccgttttaaaatacatgtcca 242  Q
    |||||||||||||||||||||||||||||    
T  17610280 tactccctccgttttaaaatacatgtcca 17610308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 45730 - 45669
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaattttttgtttcaaaatacatgt 275  Q
    |||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||||||    
T  45730 tactccctccgtttcataatacttgtccattttagagaataattttgtttcacaatacatgt 45669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 45454 - 45495
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    |||||||||||||| ||||||||||| |||||| ||||||||    
T  45454 tactccctccgtttcaaaatacatgttcattttggagaaatt 45495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1431 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 176 - 135
Alignment:
Q  214 tactccctccgttttaaaatacatgtccattttagagaaatt 255  Q
    ||||| |||||||| |||||||||||||||||| ||||||||    
T  176 tactctctccgtttcaaaatacatgtccattttggagaaatt 135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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