View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12810_low_7 (Length: 313)

Name: NF12810_low_7
Description: NF12810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12810_low_7
NF12810_low_7
[»] chr1 (6 HSPs)
chr1 (1-152)||(41602120-41602271)
chr1 (191-295)||(41601936-41602040)
chr1 (42-151)||(16263773-16263883)
chr1 (34-151)||(41602783-41602901)
chr1 (32-109)||(6815911-6815989)
chr1 (35-105)||(1670846-1670917)
[»] chr4 (7 HSPs)
chr4 (1-152)||(9470941-9471092)
chr4 (42-151)||(56395552-56395662)
chr4 (42-151)||(6230145-6230255)
chr4 (32-109)||(53648267-53648345)
chr4 (45-137)||(53721797-53721890)
chr4 (34-151)||(9470308-9470429)
chr4 (50-144)||(53722944-53723039)
[»] scaffold0633 (1 HSPs)
scaffold0633 (191-295)||(56-161)
[»] chr3 (1 HSPs)
chr3 (48-151)||(50035378-50035481)
[»] chr7 (6 HSPs)
chr7 (42-151)||(2946534-2946644)
chr7 (42-151)||(6483603-6483713)
chr7 (42-151)||(33141939-33142049)
chr7 (42-151)||(37998011-37998121)
chr7 (61-151)||(18520633-18520724)
chr7 (74-112)||(32952704-32952742)
[»] chr5 (1 HSPs)
chr5 (42-151)||(41196079-41196189)
[»] chr2 (4 HSPs)
chr2 (42-151)||(23988323-23988433)
chr2 (42-150)||(29100044-29100153)
chr2 (51-150)||(9206775-9206875)
chr2 (71-141)||(7355144-7355214)
[»] chr6 (1 HSPs)
chr6 (42-151)||(14799523-14799633)
[»] chr8 (1 HSPs)
chr8 (37-150)||(42189144-42189259)


Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 41602271 - 41602120
Alignment:
Q  1 tgaattgcattaacaacaagatcttacctgggtgagagaggaaagagaaagtaatttaaaataaaagagagtaattgggtgttagaggtgtatagtaagc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||    
T  41602271 tgaattgcattaacaacaagatcttacctgggtgagagaggaaagagaaagtaatttagaataaaagagagtaattgagtgttagaggtgtataataagc 41602172  T
Q  101 attttgatccaaagttaatttacttttatccaatggttcatatttattttgt 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41602171 attttgatccaaagttaatttacttttatccaatggttcatatttattttgt 41602120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 191 - 295
Target Start/End: Complemental strand, 41602040 - 41601936
Alignment:
Q  191 attagggctaactactagttatttgagaagcttttttgacaaacttgttttgttcactttctatggagttcgagcatatgttttttagataaactaattt 290  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41602040 attagggctaactactagttatctgagaagcttttttgacaaacttgttttgttcactttctatggagttcgagcatatgttttttagacaaactaattt 41601941  T
Q  291 tattt 295  Q
    |||||    
T  41601940 tattt 41601936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 42 - 151
Target Start/End: Complemental strand, 16263883 - 16263773
Alignment:
Q  42 aaagagaa-agtaatttaaaataaaagagagtaattgggtgttagaggtgtatagtaagcattttgatccaaagttaatttacttttatccaatggttca 140  Q
    |||||||| ||||||||| ||||||||| ||||||| |||||  ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  16263883 aaagagaagagtaatttagaataaaagaaagtaattcggtgtgggaggtatatagtaagcattttgatccaaagttaatttccttttatccaatggttca 16263784  T
Q  141 tatttattttg 151  Q
    |||||||||||    
T  16263783 tatttattttg 16263773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 34 - 151
Target Start/End: Original strand, 41602783 - 41602901
Alignment:
Q  34 gagagaggaaagagaa-agtaatttaaaataaaagagagtaattgggtgttagaggtgtatagtaagcattttgatccaaagttaatttacttttatcca 132  Q
    ||||||| |||||||| ||||||||| ||||||||| ||||||| |||||| ||||| ||||||||||||||  ||||||| || |||||   |||||||    
T  41602783 gagagagtaaagagaagagtaatttagaataaaagaaagtaattaggtgttggaggtatatagtaagcatttgaatccaaaattgatttatccttatcca 41602882  T
Q  133 atggttcatatttattttg 151  Q
    |||||||||||||||||||    
T  41602883 atggttcatatttattttg 41602901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 6815911 - 6815989
Alignment:
Q  32 gtgagagaggaaagagaa-agtaatttaaaataaaagagagtaattgggtgttagaggtgtatagtaagcattttgatc 109  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||    
T  6815911 gtgagagaggaaagagaagagtaatttaaaataaaagaaagtaattgggtgttggaggtgtatagcaaacattttgatc 6815989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 1670846 - 1670917
Alignment:
Q  35 agagaggaaagagaa-agtaatttaaaataaaagagagtaattgggtgttagaggtgtatagtaagcatttt 105  Q
    ||||||||||||||| ||||||||| ||||||||| ||||||||| |||| |||||||||||||| ||||||    
T  1670846 agagaggaaagagaagagtaatttagaataaaagaaagtaattggatgttggaggtgtatagtaaacatttt 1670917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 136; Significance: 6e-71; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 9470941 - 9471092
Alignment:
Q  1 tgaattgcattaacaacaagatcttacctgggtgagagaggaaagagaaagtaatttaaaataaaagagagtaattgggtgttagaggtgtatagtaagc 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  9470941 tgaattgcatcaacaacaagatcttacctgggtgagagaggaaagagaaagtaatttagaataaaagagagtaattgggtgttagaggtgtgtagtaagc 9471040  T
Q  101 attttgatccaaagttaatttacttttatccaatggttcatatttattttgt 152  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9471041 attttgatccaaagttaatttacttttatctaatggttcatatttattttgt 9471092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 42 - 151
Target Start/End: Complemental strand, 56395662 - 56395552
Alignment:
Q  42 aaagagaa-agtaatttaaaataaaagagagtaattgggtgttagaggtgtatagtaagcattttgatccaaagttaatttacttttatccaatggttca 140  Q
    |||||||| ||||||||| ||||||||| ||||||| |||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56395662 aaagagaatagtaatttagaataaaagaaagtaattcggtgtgggaggtatatagtaagcattttgatccaaagttaatttacttttatccaatggttca 56395563  T
Q  141 tatttattttg 151  Q
    |||||||||||    
T  56395562 tatttattttg 56395552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 42 - 151
Target Start/End: Complemental strand, 6230255 - 6230145
Alignment:
Q  42 aaagagaa-agtaatttaaaataaaagagagtaattgggtgttagaggtgtatagtaagcattttgatccaaagttaatttacttttatccaatggttca 140  Q
    |||||||| ||||||||| ||||||||| ||||||| |||||  ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6230255 aaagagaagagtaatttagaataaaagaaagtaattcggtgtgggaggtatatagtaagcattttgatccaaatttaatttacttttatccaatggttca 6230156  T
Q  141 tatttattttg 151  Q
    |||||||||||    
T  6230155 tatttattttg 6230145  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 53648345 - 53648267
Alignment:
Q  32 gtgagagaggaaagagaa-agtaatttaaaataaaagagagtaattgggtgttagaggtgtatagtaagcattttgatc 109  Q
    |||||||||||||||||| ||||||||| ||||||||| |||||||||||||| |||||||||||||| ||||||||||    
T  53648345 gtgagagaggaaagagaagagtaatttagaataaaagaaagtaattgggtgttggaggtgtatagtaaacattttgatc 53648267  T

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Target: chr4; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 53721890 - 53721797
Alignment:
Q  45 gagaaagtaatttaaaataaaagagagtaattgggtgttagaggtgtatagtaagcattttgatcc-aaagttaatttacttttatccaatggt 137  Q
    |||| ||||| ||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||||| ||  ||||||||||||    
T  53721890 gagagagtaaattaaaataaaagaaagtaattgagtgtttgaggtgtatagtaagcattttgatccaaaagttaattaacccttatccaatggt 53721797  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 151
Target Start/End: Complemental strand, 9470429 - 9470308
Alignment:
Q  34 gagagaggaaagagaa-agtaatttaaaataaaagagagtaattgggtgttagaggtg---tatagtaagcattttgatccaaagttaatttacttttat 129  Q
    ||||||| |||||||| ||||||||| ||||||||| | ||||| |||||  |||||    ||||||||||||||  ||||||| || |||||   ||||    
T  9470429 gagagagtaaagagaagagtaatttagaataaaagaaaataattaggtgtgggaggtagtatatagtaagcatttgaatccaaaattgatttatccttat 9470330  T
Q  130 ccaatggttcatatttattttg 151  Q
    ||||||||||||||||||||||    
T  9470329 ccaatggttcatatttattttg 9470308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 53722944 - 53723039
Alignment:
Q  50 agtaatttaaaataaaagagagtaattgggtgttagaggtgtatagtaagcattttgatccaaa-gttaatttacttttatccaatggttcatatt 144  Q
    ||||||||||||||||||| | ||||||| |||| ||||||||||||||  ||||||||| ||| |||| || | | ||||| |||||||||||||    
T  53722944 agtaatttaaaataaaagaaaataattggatgttggaggtgtatagtaaatattttgatctaaaggttagttaattcttatcaaatggttcatatt 53723039  T

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Target: scaffold0633 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 191 - 295
Target Start/End: Original strand, 56 - 161
Alignment:
Q  191 attagggctaactactagttatttgagaag-cttttttgacaaacttgttttgttcactttctatggagttcgagcatatgttttttagataaactaatt 289  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  56 attagggctaactactagttatctgagaagtcttttttgacaaacttgttttgttcactttctatggagttcgagcatatgttttttagacaaactaatt 155  T
Q  290 ttattt 295  Q
    ||||||    
T  156 ttattt 161  T

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Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 48 - 151
Target Start/End: Complemental strand, 50035481 - 50035378
Alignment:
Q  48 aaagtaatttaaaataaaagagagtaattgggtgttagaggtgtatagtaagcattttgatccaaagttaatttacttttatccaatggttcatatttat 147  Q
    ||||||||||| ||||||||| ||||||| |||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50035481 aaagtaatttagaataaaagaaagtaattcggtgtgggaggtatatagtaagcattttgatccaaagttaatttacttttatccaatggttcatatttat 50035382  T
Q  148 tttg 151  Q
    ||||    
T  50035381 tttg 50035378  T

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Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 42 - 151
Target Start/End: Complemental strand, 2946644 - 2946534
Alignment:
Q  42 aaagagaa-agtaatttaaaataaaagagagtaattgggtgttagaggtgtatagtaagcattttgatccaaagttaatttacttttatccaatggttca 140  Q
    |||||||| ||||||||| ||||||||| ||||||| |||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2946644 aaagagaagagtaatttagaataaaagaaagtaattcggtgtgggaggtatatagtaagcattttgatccaaagttaatttacttttatccaatggttca 2946545  T
Q  141 tatttattttg 151  Q
    |||||||||||    
T  2946544 tatttattttg 2946534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 42 - 151
Target Start/End: Complemental strand, 6483713 - 6483603
Alignment:
Q  42 aaagagaa-agtaatttaaaataaaagagagtaattgggtgttagaggtgtatagtaagcattttgatccaaagttaatttacttttatccaatggttca 140  Q
    |||||||| ||||||||| ||||||||| ||||||| |||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6483713 aaagagaagagtaatttagaataaaagaaagtaattcggtgtgggaggtatatagtaagcattttgatccaaagttaatttacttttatccaatggttca 6483614  T
Q  141 tatttattttg 151  Q
    |||||||||||    
T  6483613 tatttattttg 6483603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 42 - 151
Target Start/End: Complemental strand, 33142049 - 33141939
Alignment:
Q  42 aaagagaa-agtaatttaaaataaaagagagtaattgggtgttagaggtgtatagtaagcattttgatccaaagttaatttacttttatccaatggttca 140  Q
    |||||||| ||||||||| ||||||||| ||||||| |||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33142049 aaagagaagagtaatttagaataaaagaaagtaattcggtgtgggaggtatatagtaagcattttgatccaaagttaatttacttttatccaatggttca 33141950  T
Q  141 tatttattttg 151  Q
    |||||||||||    
T  33141949 tatttattttg 33141939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 42 - 151
Target Start/End: Original strand, 37998011 - 37998121
Alignment:
Q  42 aaagagaa-agtaatttaaaataaaagagagtaattgggtgttagaggtgtatagtaagcattttgatccaaagttaatttacttttatccaatggttca 140  Q
    |||||||| ||||| ||| ||||||||| ||||||| |||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37998011 aaagagaagagtaaattagaataaaagaaagtaattcggtgtgggaggtatatagtaagcattttgatccaaagttaatttacttttatccaatggttca 37998110  T
Q  141 tatttattttg 151  Q
    |||||||||||    
T  37998111 tatttattttg 37998121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 151
Target Start/End: Original strand, 18520633 - 18520724
Alignment:
Q  61 ataaaagagagtaattgggtgttagaggtgtatagtaagcattttgatcc-aaagttaatttacttttatccaatggttcatatttattttg 151  Q
    |||||||| |||||||||||| |  | |||||||||||| |||||||||| |||||||||| ||||||||| ||| ||||||||||||||||    
T  18520633 ataaaagaaagtaattgggtgctgaaagtgtatagtaaggattttgatccaaaagttaattaacttttatcaaatagttcatatttattttg 18520724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 112
Target Start/End: Complemental strand, 32952742 - 32952704
Alignment:
Q  74 attgggtgttagaggtgtatagtaagcattttgatccaa 112  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  32952742 attgagtgttggaggtgtatagtaagcattttgatccaa 32952704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 42 - 151
Target Start/End: Complemental strand, 41196189 - 41196079
Alignment:
Q  42 aaagagaa-agtaatttaaaataaaagagagtaattgggtgttagaggtgtatagtaagcattttgatccaaagttaatttacttttatccaatggttca 140  Q
    |||||||| ||||||||| ||||||||| ||||||| |||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41196189 aaagagaagagtaatttagaataaaagaaagtaattcggtgtgggaggtatatagtaagcattttgatccaaagttaatttacttttatccaatggttca 41196090  T
Q  141 tatttattttg 151  Q
    |||||||||||    
T  41196089 tatttattttg 41196079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 42 - 151
Target Start/End: Complemental strand, 23988433 - 23988323
Alignment:
Q  42 aaagagaa-agtaatttaaaataaaagagagtaattgggtgttagaggtgtatagtaagcattttgatccaaagttaatttacttttatccaatggttca 140  Q
    |||||||| ||||||||| ||||||||| ||||||| |||||  ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23988433 aaagagaagagtaatttagaataaaagaaagtaattcggtgtgggaggtatatagtaagcattttgatccaaagttaatttacttttatccaatagttca 23988334  T
Q  141 tatttattttg 151  Q
    |||||||||||    
T  23988333 tatttattttg 23988323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 42 - 150
Target Start/End: Complemental strand, 29100153 - 29100044
Alignment:
Q  42 aaagagaa-agtaatttaaaataaaagagagtaattgggtgttagaggtgtatagtaagcattttgatccaaagttaatttacttttatccaatggttca 140  Q
    |||||||| ||||||||| ||||||||| ||||||| |||||  ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29100153 aaagagaagagtaatttagaataaaagaaagtaattcggtgtgggaggtatatagtaaacattttgatccaaagttaatttacttttatccaatggttca 29100054  T
Q  141 tatttatttt 150  Q
    ||||||||||    
T  29100053 tatttatttt 29100044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 51 - 150
Target Start/End: Original strand, 9206775 - 9206875
Alignment:
Q  51 gtaatttaaaataaaagagagtaattgggtgttagaggtgtatagtaagcattttgatcc-aaagttaatttacttttatccaatggttcatatttattt 149  Q
    |||||||| ||||||||| || ||||||||||| ||||||||||||||| |||||||||| ||| ||| || |   ||||||||||||||||||||||||    
T  9206775 gtaatttagaataaaagatagcaattgggtgttggaggtgtatagtaagtattttgatccaaaaattagttaatccttatccaatggttcatatttattt 9206874  T
Q  150 t 150  Q
    |    
T  9206875 t 9206875  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 7355214 - 7355144
Alignment:
Q  71 gtaattgggtgttagaggtgtatagtaagcattttgatccaaagttaatttacttttatccaatggttcat 141  Q
    ||||||||||||  || ||||||| ||| ||||||||||||||||||||| || |||||| ||||||||||    
T  7355214 gtaattgggtgtgggaagtgtataataaacattttgatccaaagttaattaacctttatctaatggttcat 7355144  T

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Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 42 - 151
Target Start/End: Complemental strand, 14799633 - 14799523
Alignment:
Q  42 aaagagaa-agtaatttaaaataaaagagagtaattgggtgttagaggtgtatagtaagcattttgatccaaagttaatttacttttatccaatggttca 140  Q
    |||||||| ||||||||| ||||||||| ||||||| |||||  ||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  14799633 aaagagaagagtaatttagaataaaagaaagtaattcggtgtgggaggtatatagtaagaattttgatccaaagttaatttacttttattcaatggttca 14799534  T
Q  141 tatttattttg 151  Q
    |||||||||||    
T  14799533 tatttattttg 14799523  T

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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 150
Target Start/End: Complemental strand, 42189259 - 42189144
Alignment:
Q  37 agaggaaagagaa-agtaatttaaaataaaagagagtaattgggtgttagaggtgtatagtaagcattttga-tccaaagttaatttacttttatccaat 134  Q
    |||| |||||||| ||||||||| ||||||| | | |||||||||||| ||||||||||||||||||||||| || |||||||||| || ||||||||||    
T  42189259 agagaaaagagaagagtaatttagaataaaacaaaataattgggtgttggaggtgtatagtaagcattttgattcaaaagttaattaacctttatccaat 42189160  T
Q  135 ggttcatatttatttt 150  Q
    ||||| |||| |||||    
T  42189159 ggttcgtattcatttt 42189144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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