View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12811_low_1 (Length: 815)
Name: NF12811_low_1
Description: NF12811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12811_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 451 - 804
Target Start/End: Complemental strand, 16699823 - 16699465
Alignment:
| Q |
451 |
tattgctccttcattttaccatttattgaaatgatttgcacagattgcagatgcagtggttgtagctaggtacctaggagccactcttgtgcttcctgac |
550 |
Q |
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| T |
16699823 |
tattgctccttcattttaccatttcttgaaatgatttgcacagattgcagatgcagtggttgtagctaggtacctaggagccactcttgtgcttcctgac |
16699724 |
T |
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| Q |
551 |
atcaagaatagcaaatcaggaaatagcatgtgtgtgctctatatcacatgataagtttttgattgatatcatttcaatttttattaatttgtttagtaac |
650 |
Q |
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| T |
16699723 |
atcaagaatagcaaatcaggaaatagcatgtgtgtgctctatatcacatgataagtttttgattgatatcatttcaatttttattaatttgtttagtaac |
16699624 |
T |
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| Q |
651 |
caagaattttaatttatgaatatatgatacgactcatacatagtagatatgcttaaatgccacatataccctcca-----nnnnnnnnctatattttaca |
745 |
Q |
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| T |
16699623 |
caagaattttaatttatgaatatatgatacgactcatacatagtagatatgcttaaatgccacatataccctccatttttttttctttctatattttaca |
16699524 |
T |
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| Q |
746 |
aaataaaagaaaggtaagtgtaatttagtaaagattaatgtttacatatttgatttcat |
804 |
Q |
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| T |
16699523 |
aaataaaagaaaggtaagtgtaatttagtaaagattaatgtttacatatttgatttcat |
16699465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 283
Target Start/End: Complemental strand, 16700279 - 16700015
Alignment:
| Q |
19 |
agtagacacaactaaggttttaacttttaagtcatagtcacagtcatggttttaaatgcggttgaggtctcggttgcagttacgtgtcaaccgttattgt |
118 |
Q |
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| T |
16700279 |
agtagacacaactaaggttttaactttataatcatagtcacagtcatggttttaaatgcggttgtggtctcggttgcagttacgtgtcaaccgttattgt |
16700180 |
T |
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| Q |
119 |
ggtaaaatgtagatgacacgtttgaaattgtggttgtcgaaatgttgtagatacttaaaaatcttttatattatggcggttgtggaccgcaatttaaaac |
218 |
Q |
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| T |
16700179 |
ggtaaaatgtagatgacacatttgaaattgtggttgtcgaaatgttgtagatacttaaaaatgttttatattatggcggttgtggaccgcaatttaaaac |
16700080 |
T |
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| Q |
219 |
catgatcatagtatactgatagtcgtgtctttgatgtcgcaaccacaatctcaccattcattttt |
283 |
Q |
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| T |
16700079 |
catgatcatagtatactgatagtcgtgtctttgatgtcacggccacaatcgcacggttcattttt |
16700015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 290 - 385
Target Start/End: Complemental strand, 16699972 - 16699877
Alignment:
| Q |
290 |
ttaacctgcagaggaagaagaccaatctaaaggtttcgtcatattttccttaacaaatggccctgagtatcatatctcacaggtttgttgcacaac |
385 |
Q |
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| T |
16699972 |
ttaacctgtagaggaagaagaccaatctaaaggtttcgtcatattttccttaacaaatggccctgagtatcatatctcacaggtttgttgcacaac |
16699877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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