View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12811_low_10 (Length: 238)
Name: NF12811_low_10
Description: NF12811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12811_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 47266562 - 47266715
Alignment:
| Q |
1 |
ttttaaggcaagagattgccaaatctgtttattaattattttgtttttgaaaatgtcaattatgttaagaaaattgaaaagacaatagactaattattgt |
100 |
Q |
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| T |
47266562 |
ttttaaggcaagagattgccaaatctgtttattaattattttgtttttgaaaatgtcaattatgttaagaaaatcgaaaagacaatagactaattattgt |
47266661 |
T |
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| Q |
101 |
agtttctgtgatacaggaggtttaatgaaattgtctgtaagaagaaaaacgtga |
154 |
Q |
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| T |
47266662 |
agtttctgtgatacaggaggtttaatgaaattgtctgtaagaagaaaaacgtga |
47266715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 47258983 - 47259043
Alignment:
| Q |
4 |
taaggcaagagattgccaaatctgtttattaattattttgtttttgaaaatgtcaattatg |
64 |
Q |
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| T |
47258983 |
taaggcaagaaagtgccaaatctgtttgttagttattctgtttttggaaatgtcatttatg |
47259043 |
T |
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