View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12811_low_2 (Length: 644)
Name: NF12811_low_2
Description: NF12811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12811_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 179 - 638
Target Start/End: Original strand, 11584342 - 11584801
Alignment:
| Q |
179 |
caccactaccagtttgtagtgtaataaacaatagtctaattgaaattttgatggttctaaccccaagatttatcacaacaaaaaacattgtttaaccaac |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11584342 |
caccactaccagtttgtagtgtaataaacaagagtctaattgaaattttgatggttctaaccccaagatttatcacaacaaaaaacattgtttaaccaac |
11584441 |
T |
|
| Q |
279 |
aagcattttattttagggttatgacccacttttcaaagctaccaccatattttctcatatactctaccccaggtttgagatcaaatgacaatccaggaga |
378 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11584442 |
aagcattttattttagggttgtgacccacttttcaaagctaccaccatattttctcatatactctaccccaggtttgagatcaaatgacaatccaggaga |
11584541 |
T |
|
| Q |
379 |
gagctttggataggaaagcaagcaatttgttgcaacaacatcaacccatgaacaatcatccgaaaaccaaatagaaatcttctccaaaactccgccattt |
478 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11584542 |
gagctttggataggaaagcaagcaatttgttgcaacaacattaacccatgaacaatcttccaaaaaccaaatagaaatcttctccaaaactccgccattt |
11584641 |
T |
|
| Q |
479 |
aatattaagtatttgacaaattcaacttcaaactcacaacctgtgtatccccttatacaaagcgactttagttgataagtgacgcaccaacacggctccc |
578 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11584642 |
aatattaagtacttaacaaattcaacttcaaactcaccacctgtgtatccccttatacaaagcgactttagttgataagtgacgcaccaacatggctccc |
11584741 |
T |
|
| Q |
579 |
tcaattgccaaaacaagactccaggatacggtaaacaatcattctcattcttctcactcg |
638 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
11584742 |
tcaattgccaaaacaagactccagggtacggtaaacaatcattctcattctgatcactcg |
11584801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 11584193 - 11584281
Alignment:
| Q |
18 |
ttaagttctagtgagtatagatatcactttttaaaataacaaagggcaaaacgcacatggatttattgtctgcaatgcatagaagcttataataaagtat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11584193 |
ttaagttctagtgagtatagatatcactttttaaaataacaaa-------------atggatttattgtctgcaatgcatagaagcttataataaagtat |
11584279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 2e-48; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 347 - 629
Target Start/End: Complemental strand, 30373953 - 30373671
Alignment:
| Q |
347 |
ccaggtttgagatcaaatgacaatccaggagagagctttggataggaaagcaagcaatttgttgcaacaacatcaacccatgaacaatcatccgaaaacc |
446 |
Q |
| |
|
|||||||| |||||||| |||||| || ||| |||||||| || ||||||| ||||| ||||| ||||| | |||||| ||||||||| |||||| |
|
|
| T |
30373953 |
ccaggtttaagatcaaaggacaatttagaagaaagctttgggtacgaaagcagacaattagttgctacaactttgttccatgagcaatcatccaaaaacc |
30373854 |
T |
|
| Q |
447 |
aaatagaaatcttctccaaaactccgccatttaatattaagtatttgacaaattcaacttcaaactcacaacctgtgtatccccttatacaaagcgactt |
546 |
Q |
| |
|
||| | ||| ||||| | |||||| || |||||||||||||| || ||||||||| ||||||||| | |||||| ||||||||||||||||| ||||| |
|
|
| T |
30373853 |
aaagtgtaatattctctataactccaccgtttaatattaagtacttaacaaattcatattcaaactctccacctgtatatccccttatacaaagagactt |
30373754 |
T |
|
| Q |
547 |
tagttgataagtgacgcaccaacacggctccctcaattgccaaaacaagactccaggatacggtaaacaatcattctcattct |
629 |
Q |
| |
|
|||||| ||| |||| |||| ||| |||||||| || ||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
30373753 |
tagttggtaaatgacacaccgacatggctcccttttttcccaaaacaagactccaggatacggtaaacaagcattgtcattct |
30373671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 285 - 549
Target Start/End: Original strand, 29785603 - 29785867
Alignment:
| Q |
285 |
tttattttagggttatgacccacttttcaaagctaccaccatattttctcatatactctaccccaggtttgagatcaaatgacaatccaggagagagctt |
384 |
Q |
| |
|
|||| ||||||||| | ||||| | ||||||||||| ||||| ||| |||||||| ||||||||| | ||||| ||||||| ||||||||| || |
|
|
| T |
29785603 |
tttagtttagggttctcacccattcatcaaagctacctccatacttttgtatatactcggtcccaggtttcaaatcaattgacaatttaggagagagttt |
29785702 |
T |
|
| Q |
385 |
tggataggaaagcaagcaatttgttgcaacaacatcaacccatgaacaatcatccgaaaaccaaatagaaatcttctccaaaactccgccatttaatatt |
484 |
Q |
| |
|
|||||| || |||| || ||||| ||||| ||| |||| || || |||||| |||||||||| | ||| || |||| ||||||||||||||||| | |
|
|
| T |
29785703 |
tggatatgaccgcaaacatgcagttgctacaacttcatcccacgagcattcatccaaaaaccaaatggtaatattatccataactccgccatttaatact |
29785802 |
T |
|
| Q |
485 |
aagtatttgacaaattcaacttcaaactcacaacctgtgtatccccttatacaaagcgactttag |
549 |
Q |
| |
|
||||| || || || |||| ||||||||| | |||| |||||||| ||||||||| |||||||| |
|
|
| T |
29785803 |
aagtacttaacgaactcaaattcaaactctccacctttgtatccctttatacaaacagactttag |
29785867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 285 - 537
Target Start/End: Complemental strand, 29965340 - 29965088
Alignment:
| Q |
285 |
tttattttagggttatgacccacttttcaaagctaccaccatattttctcatatactctaccccaggtttgagatcaaatgacaatccaggagagagctt |
384 |
Q |
| |
|
|||||||||||||| | ||||| | ||||| || |||||||| || |||| ||| | ||||||||| | || || ||||||| ||||||||| || |
|
|
| T |
29965340 |
tttattttagggttctaacccattcatcaaatctgccaccatacttctgtatattctcgatcccaggtttcaaattaattgacaatttaggagagagttt |
29965241 |
T |
|
| Q |
385 |
tggataggaaagcaagcaatttgttgcaacaacatcaacccatgaacaatcatccgaaaaccaaatagaaatcttctccaaaactccgccatttaatatt |
484 |
Q |
| |
|
|||||| || |||| || ||||| ||||| ||| |||||||||| |||||| |||||||||| | ||| || |||| ||||||||||||||||||| |
|
|
| T |
29965240 |
tggatatgaccgcaaacatccagttgctacaacttcatcccatgaacagtcatccaaaaaccaaatggtaatattatccataactccgccatttaatatt |
29965141 |
T |
|
| Q |
485 |
aagtatttgacaaattcaacttcaaactcacaacctgtgtatccccttataca |
537 |
Q |
| |
|
||||| || || || |||| ||||||||| | |||| |||||||| ||||||| |
|
|
| T |
29965140 |
aagtacttcacgaactcaaattcaaactctccacctttgtatccctttataca |
29965088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 285 - 539
Target Start/End: Complemental strand, 29839390 - 29839136
Alignment:
| Q |
285 |
tttattttagggttatgacccacttttcaaagctaccaccatattttctcatatactctaccccaggtttgagatcaaatgacaa-tccaggagagagct |
383 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||| | |||||| | ||||| || || | |||| ||||||| |
|
|
| T |
29839390 |
tttattttagggttcggacccactcatcaaagctaccaccatattttcttatatactctatactaggtttcatatcaatagataatttcagg-gagagct |
29839292 |
T |
|
| Q |
384 |
ttggataggaaagcaagcaatttgttgcaacaacatcaacccatgaacaatcatccgaaaaccaaatagaaatcttctccaaaactccgccatttaatat |
483 |
Q |
| |
|
| ||||| || | || || ||||| || || ||| ||||||| || ||||| |||||||||| | ||| || | || |||||| ||||||||||| |
|
|
| T |
29839291 |
tcggatatgaccgtaaacatgcagttgctactacttcatcccatgagcagtcatctaaaaaccaaattgtaatattattcataactcctccatttaatat |
29839192 |
T |
|
| Q |
484 |
taagtatttgacaaattcaacttcaaactcacaacctgtgtatccccttatacaaa |
539 |
Q |
| |
|
|||||| || |||||||||| ||||||||| | |||| || ||||| | ||||||| |
|
|
| T |
29839191 |
taagtacttaacaaattcaagttcaaactctccacctttgcatcccttcatacaaa |
29839136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 311 - 526
Target Start/End: Original strand, 29857007 - 29857222
Alignment:
| Q |
311 |
tcaaagctaccaccatattttctcatatactctaccccaggtttgagatcaaatgacaatccaggagagagctttggataggaaagcaagcaatttgttg |
410 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| || |||||| | ||||| || ||| || ||||||||| |||| || | || || |||| |
|
|
| T |
29857007 |
tcaaagctaccaccatattttcttatatactctatcctaggtttcaaatcaatggataatttcggggagagctttagatatgactgtaaacatgcagttg |
29857106 |
T |
|
| Q |
411 |
caacaacatcaacccatgaacaatcatccgaaaaccaaatagaaatcttctccaaaactccgccatttaatattaagtatttgacaaattcaacttcaaa |
510 |
Q |
| |
|
| || || ||| ||||||| || |||||| |||||||||| | ||| || | || |||||| ||||||||||||||||| || ||||||||| |||||| |
|
|
| T |
29857107 |
ctacgacttcatcccatgagcagtcatccaaaaaccaaattgtaatattattcataactcctccatttaatattaagtacttagcaaattcaatttcaaa |
29857206 |
T |
|
| Q |
511 |
ctcacaacctgtgtat |
526 |
Q |
| |
|
||| | |||| ||||| |
|
|
| T |
29857207 |
ctctccacctttgtat |
29857222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 285 - 354
Target Start/End: Complemental strand, 29857473 - 29857404
Alignment:
| Q |
285 |
tttattttagggttatgacccacttttcaaagctaccaccatattttctcatatactctaccccaggttt |
354 |
Q |
| |
|
|||||||||| ||| |||||||| ||||||||||||||||||||||| ||||| |||| ||||||||| |
|
|
| T |
29857473 |
tttattttagtgttcggacccactcatcaaagctaccaccatattttcttatatattctatcccaggttt |
29857404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 540
Target Start/End: Complemental strand, 29857278 - 29857215
Alignment:
| Q |
477 |
ttaatattaagtatttgacaaattcaacttcaaactcacaacctgtgtatccccttatacaaag |
540 |
Q |
| |
|
||||||||||||| || ||||||||| ||||||||| | |||| |||||||| |||||||||| |
|
|
| T |
29857278 |
ttaatattaagtacttaccaaattcaatttcaaactctccacctttgtatccctttatacaaag |
29857215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University