View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12811_low_4 (Length: 484)
Name: NF12811_low_4
Description: NF12811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12811_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 18 - 470
Target Start/End: Complemental strand, 506741 - 506289
Alignment:
| Q |
18 |
aactacatttgtccttaatcttctataatattataaatcctaatcctaacacaactgtcatgctaaccacaatttaaaatcatgaataaatcttagtcag |
117 |
Q |
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| T |
506741 |
aactacatttgtccttaatcttctataatattaaaaaccctaatcctaacacaactgtcatgctaaccacaatttaaaatcatgaataaatcttagtcag |
506642 |
T |
|
| Q |
118 |
ttcacctataaactcagcacactgagctacacttgttgggtgtaattccttaaataaacatagataattaacatttttctcactggaaatagaaaattca |
217 |
Q |
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| T |
506641 |
ttcacctataaactcagcatactgagctacacttgttgggtgtatttccttaaataaacatagataattaacatttttctcactggaaatagaaaattca |
506542 |
T |
|
| Q |
218 |
aattcaaagcattggttgtataaattttgtgacagacataaatattaatattgtatctagaaaaagatagaaatgaatgaggttacttcacatcaaaaca |
317 |
Q |
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| T |
506541 |
aattcaaagcattggttgtataaattttgtgacagacataaatattaatattgtatctagaaaaagatagaaatgaatgaggttacttcacatcaaaaca |
506442 |
T |
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| Q |
318 |
tcacttgtctgagagtcttgtaatggtcccagaatcacttaaacctctacaaaaaccccacttaaaagaagactctttcatagggatcagagttctgaat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
506441 |
tcacttgtctgagagtcttgtaatggtcccagaatcacttaaacctctacaaaaaccccacttaaaagaagactctttcagagggatcagagttctgaat |
506342 |
T |
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| Q |
418 |
ctgatatgaaaagtatatggcagttgattgatacaacaaactgttgtccaaac |
470 |
Q |
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| T |
506341 |
ctgatatgaaaagtatatggcagttgattgatacaacaaactgttctccaaac |
506289 |
T |
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