View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12811_low_6 (Length: 321)
Name: NF12811_low_6
Description: NF12811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12811_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 11526730 - 11526427
Alignment:
| Q |
1 |
tccaacgcatgtaccttcaaagtctctaaaaattccaccgcaggaagagactcctggatttcctaaagatgcaccatctgaattgcattttatccaatga |
100 |
Q |
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| T |
11526730 |
tccaaggcatgtaccttcaaagtctctaaaaattccaccgcaggaagaaactcctggatttcccaaagatgcaccatctgaattgcattttatccaatga |
11526631 |
T |
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| Q |
101 |
tacaaaggagacctccagatgacttcagtgatagtaggagctttaaggcgatgaatgttaacattgaataatttgaggacggtaaagtcacagattgagt |
200 |
Q |
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| T |
11526630 |
tacaaaggagacctccagatgact-cagtgatagtaggagctttagggcgatgaatgttaacattgaataatttgaggatggtaaagtcacggattgagt |
11526532 |
T |
|
| Q |
201 |
tgttagaagccttgtttgttaagtttccagtgagggaagtgttggagatgatatctgagatagcagacttccaatggatcaacttattactaaaccttga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11526531 |
tgttagaagccttgtttgttaagtttccagtgagggaagtgttggagatgatatctgagatagcagacttccaatggatcaacttattactaaaccttga |
11526432 |
T |
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| Q |
301 |
ttcat |
305 |
Q |
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||||| |
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| T |
11526431 |
ttcat |
11526427 |
T |
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