View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12811_low_7 (Length: 264)
Name: NF12811_low_7
Description: NF12811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12811_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 41307679 - 41307427
Alignment:
| Q |
1 |
ctttcttctgcaaaaatcaaaatataactttgttattaccatctaattacaagtttacaacatgatgcttttgttgttggcgattgttagtctatgtttg |
100 |
Q |
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| T |
41307679 |
ctttcttctgcaaaaatcaaaatataactttgtta---ccatctaattacaagtttacaacatcatgcttttgttgttgacgattgttaatctatgtttg |
41307583 |
T |
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| Q |
101 |
atatcaccgttagcgtgccagagtcacggtatgatatcaaacatagacggactaaaaatgttaatgtaaaattatgaatggaaggaaaaatgagtgactc |
200 |
Q |
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| T |
41307582 |
atatcaccgtgagcgtgccagaatcacggtatgatatcaaacatagacagactaaaaatgttaatgtaaaattatgaatggaaggaaaaatgagtgactc |
41307483 |
T |
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| Q |
201 |
accattgcaacaagaggagaaccatataatgctacagaaacaacaaaacctatgct |
256 |
Q |
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| T |
41307482 |
accattgcaacaagaggagaaccatataatgctacagaaacaactaaacctatgct |
41307427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 258
Target Start/End: Complemental strand, 41297671 - 41297608
Alignment:
| Q |
195 |
tgactcaccattgcaacaagaggagaaccatataatgctacagaaacaacaaaacctatgcttc |
258 |
Q |
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| T |
41297671 |
tgactcaccattgcaacaagaggagaaccatacaatgcaacagaaacacctaaacctatgcttc |
41297608 |
T |
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