View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12811_low_9 (Length: 241)
Name: NF12811_low_9
Description: NF12811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12811_low_9 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 41307968 - 41307745
Alignment:
| Q |
18 |
cctctcttttctgtatttgaagtaaatcacaagctggagtatgcttaagggagttccaaccagactaggaccctgtaatcatattaccaaaaattaagaa |
117 |
Q |
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| T |
41307968 |
cctctcttttctgtatttgaagtaaatcacaagctggagtatgcttaagggagttccaaccagactaggaccctgtaatcatagtaccaaaaattaagaa |
41307869 |
T |
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| Q |
118 |
aaacaatattagtatgtctatttaactaatttttcttagattaattaatgagattatgtatgattaagaaacaaaccgcaacaaatacatcacgaacaag |
217 |
Q |
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| T |
41307868 |
aaacaatattagtatttctatttaactaatttttcttagattaattaatgagattatgtatgattaagaaacaaaccgcaacaaatacatcacgaacaag |
41307769 |
T |
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| Q |
218 |
gattccataagctaaccagaatac |
241 |
Q |
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| T |
41307768 |
gattccataagctaaccagaatac |
41307745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 41298056 - 41297983
Alignment:
| Q |
23 |
cttttctgtatttgaagtaaatcacaagctggagtatgcttaagggagttccaaccagactaggaccctgtaat |
96 |
Q |
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| T |
41298056 |
cttttctgtatttgaagtaaaccacaagctgtagaatgcttaagggtgttccaaccacacttggaccctgtaat |
41297983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 41297907 - 41297856
Alignment:
| Q |
184 |
agaaacaaaccgcaacaaatacatcacgaacaaggattccataagctaacca |
235 |
Q |
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| T |
41297907 |
agaaactaaccgcaacaaatacatcacgaacaaggattccataaactaacca |
41297856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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