View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12812_high_10 (Length: 356)

Name: NF12812_high_10
Description: NF12812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12812_high_10
NF12812_high_10
[»] chr1 (3 HSPs)
chr1 (18-309)||(46748783-46749061)
chr1 (190-238)||(16925588-16925636)
chr1 (168-232)||(18946048-18946112)
[»] chr8 (4 HSPs)
chr8 (154-238)||(42874497-42874581)
chr8 (164-233)||(18170492-18170561)
chr8 (164-233)||(18634060-18634129)
chr8 (166-233)||(26915252-26915319)
[»] chr7 (2 HSPs)
chr7 (166-243)||(1885543-1885620)
chr7 (166-240)||(5937433-5937507)
[»] chr6 (1 HSPs)
chr6 (164-243)||(1334631-1334710)
[»] chr5 (3 HSPs)
chr5 (156-243)||(30080503-30080590)
chr5 (138-205)||(42192284-42192351)
chr5 (166-243)||(19167588-19167666)
[»] chr3 (2 HSPs)
chr3 (164-205)||(14338493-14338534)
chr3 (171-227)||(41319327-41319383)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 46748783 - 46749061
Alignment:
Q  18 aaatgtcacatgcactatcgcataaaagggtttgcacctgtctagtagcaagaaaaaccaaaagttaccatctcggttgcacggacacttttaattaaag 117  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46748783 aaatgtcacatgcactatcacataaaagggtttgcacctgtctagtagcaagaaaaaccaaaagttaccatctcggttgcacggacacttttaattaaag 46748882  T
Q  118 gcgtatctggtgtcttatacgtgtctgataccgacgcaacactgatatttgtgattacattgaactatgccgttttttcaaaattttaatggtgtcggcg 217  Q
    | || ||||           ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  46748883 gtgtgtctg-----------gtgtctgataccgacgcaacactgacatttgtgattacattgaactatgtcgttttttcaaaattttaatggtgtcggcg 46748971  T
Q  218 tgtccgtgtcagtgtcatgtctggtggtccaatcagtannnnnnnnnaggtccagcactacagtccattcaataaagaaaggtgattctttc 309  Q
    |||||||||||||||||||| ||||| |||||||| ||         ||||| |||||||||||||||||||||||||||||||||||||||    
T  46748972 tgtccgtgtcagtgtcatgtgtggtgatccaatcaata--tttttttaggtctagcactacagtccattcaataaagaaaggtgattctttc 46749061  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 16925636 - 16925588
Alignment:
Q  190 ttttttcaaaattttaatggtgtcggcgtgtccgtgtcagtgtcatgtc 238  Q
    ||||||||||||||||  ||| ||| | |||||||||||||||||||||    
T  16925636 ttttttcaaaattttatcggtatcgacatgtccgtgtcagtgtcatgtc 16925588  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 18946048 - 18946112
Alignment:
Q  168 gtgattacattgaactatgccgttttttcaaaattttaatggtgtcggcgtgtccgtgtcagtgt 232  Q
    |||||||||||||| |||| | |||| ||||||||| | |||||||| || ||||||||| ||||    
T  18946048 gtgattacattgaattatgtcattttctcaaaatttgactggtgtcgacgggtccgtgtccgtgt 18946112  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 238
Target Start/End: Complemental strand, 42874581 - 42874497
Alignment:
Q  154 caacactgatatttgtgattacattgaactatgccgttttttcaaaattttaatggtgtcggcgtgtccgtgtcagtgtcatgtc 238  Q
    ||||||||| | |||||||||||||||| |||| | |||| ||||||| |||| ||||||| ||||||||||| |||||| ||||    
T  42874581 caacactgacacttgtgattacattgaattatgtcattttctcaaaatgttaacggtgtcgacgtgtccgtgttagtgtcgtgtc 42874497  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 18170492 - 18170561
Alignment:
Q  164 atttgtgattacattgaactatgccgttttttcaaaattttaatggtgtcggcgtgtccgtgtcagtgtc 233  Q
    |||||| ||||||||||| ||||   |||||||||| ||||||| ||||||||||||| ||||| |||||    
T  18170492 atttgtaattacattgaattatgtaattttttcaaatttttaattgtgtcggcgtgtcagtgtccgtgtc 18170561  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 18634060 - 18634129
Alignment:
Q  164 atttgtgattacattgaactatgccgttttttcaaaattttaatggtgtcggcgtgtccgtgtcagtgtc 233  Q
    |||||| ||||||||||| ||||   |||||||||| ||||||| ||||||||||||| ||||| |||||    
T  18634060 atttgtaattacattgaattatgtaattttttcaaatttttaattgtgtcggcgtgtcagtgtccgtgtc 18634129  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 26915252 - 26915319
Alignment:
Q  166 ttgtgattacattgaactatgccgttttttcaaaattttaatggtgtcggcgtgtccgtgtcagtgtc 233  Q
    ||||||||||||| || |||| | |||| |||||||||||   |||||| ||||||||||||||||||    
T  26915252 ttgtgattacattaaattatgtcattttctcaaaattttatccgtgtcgacgtgtccgtgtcagtgtc 26915319  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 1885620 - 1885543
Alignment:
Q  166 ttgtgattacattgaactatgccgttttttcaaaattttaatggtgtcggcgtgtccgtgtcagtgtcatgtctggtg 243  Q
    |||||||||||||||| |||| | ||||||||||||||||   ||||||  |||||||| |||||||| |||| ||||    
T  1885620 ttgtgattacattgaattatgtcattttttcaaaattttatccgtgtcgatgtgtccgtatcagtgtcgtgtccggtg 1885543  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 5937433 - 5937507
Alignment:
Q  166 ttgtgattacattgaactatgccgttttttcaaaattttaatggtgtcggcgtgtccgtgtcagtgtcatgtctg 240  Q
    |||||||||||||||| |||| | |||| |||||||||||   |||| | |||||| |||||||||| |||||||    
T  5937433 ttgtgattacattgaattatgtcattttctcaaaattttatccgtgttgacgtgtctgtgtcagtgttatgtctg 5937507  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 1334710 - 1334631
Alignment:
Q  164 atttgtgattacattgaactatgccgttttttcaaaattttaatggtgtcggcgtgtccgtgtcagtgtcatgtctggtg 243  Q
    |||||||||||||||||| |||| | ||||||||||||||||   |||||   ||||| ||||||||||| |||| ||||    
T  1334710 atttgtgattacattgaattatgtccttttttcaaaattttatccgtgtcaatgtgtctgtgtcagtgtcgtgtccggtg 1334631  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 30080503 - 30080590
Alignment:
Q  156 acactgatatttgtgattacattgaactatgccgttttttcaaaattttaatggtgtcggcgtgtccgtgtcagtgtcatgtctggtg 243  Q
    |||| |||| |||||||||||||||| |||| | |||| |||||||||||   |||||| | | ||||||||| |||| |||||||||    
T  30080503 acaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgacatttccgtgtcattgtcgtgtctggtg 30080590  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 42192351 - 42192284
Alignment:
Q  138 gtgtctgataccgacgcaacactgatatttgtgattacattgaactatgccgttttttcaaaatttta 205  Q
    ||||||||| ||||||||||| ||| || ||||||||||||||| |||| | || | |||||||||||    
T  42192351 gtgtctgatgccgacgcaacattgacatgtgtgattacattgaattatgtcattgtctcaaaatttta 42192284  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 243
Target Start/End: Original strand, 19167588 - 19167666
Alignment:
Q  166 ttgtgattacattgaactatgccgtttt-ttcaaaattttaatggtgtcggcgtgtccgtgtcagtgtcatgtctggtg 243  Q
    |||||||||||||||| | || | |||| ||||||||||||  ||||||  |||||| ||||||||||| |||||||||    
T  19167588 ttgtgattacattgaattgtgtcatttttttcaaaattttatcggtgtcaacgtgtctgtgtcagtgtcgtgtctggtg 19167666  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 14338493 - 14338534
Alignment:
Q  164 atttgtgattacattgaactatgccgttttttcaaaatttta 205  Q
    |||||||||||||||||| |||| | ||||||||||||||||    
T  14338493 atttgtgattacattgaattatgtcattttttcaaaatttta 14338534  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 41319327 - 41319383
Alignment:
Q  171 attacattgaactatgccgttttttcaaaattttaatggtgtcggcgtgtccgtgtc 227  Q
    ||||||||||| |||| | |||||||||| | ||| |||||||| ||||||||||||    
T  41319327 attacattgaattatgtcattttttcaaattattattggtgtcgacgtgtccgtgtc 41319383  T

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