View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12812_high_11 (Length: 302)
Name: NF12812_high_11
Description: NF12812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12812_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 23 - 291
Target Start/End: Complemental strand, 7883279 - 7883008
Alignment:
| Q |
23 |
aaacatcagtgcattgtttcaccattagatttcatttgatatgtgagagttaccacttttgtgaagtaat---ccgcagttgaatcttgatttgacatct |
119 |
Q |
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| T |
7883279 |
aaacttcattgcattgtttcaccattatatttcatttgatatgtgagagttaccacttttgtgaagtaataatcagcagttgaatcttgatttgacatct |
7883180 |
T |
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| Q |
120 |
acaacatttcatattggcgccttaaagcttgcagcttcaccttctttatcttttcatcaccaccataagcgttcttgataatatcccaagccctttttgc |
219 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7883179 |
acaacatttcatattggcgccttaaagctttcagcttcaccttctttatcttttcatcaccaccataagcgttcttgataatatcccaagtcctttttgc |
7883080 |
T |
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| Q |
220 |
agattcttgatcaattttcttctcaaaaatattaggatcaatgcactgatgaattagaaacaagccctttgc |
291 |
Q |
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| T |
7883079 |
agattcttgatcaattttcttctcaaaaatattaggatcaatgcactgatgaattagaaacaagccctttgc |
7883008 |
T |
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Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 101 - 291
Target Start/End: Complemental strand, 44756356 - 44756163
Alignment:
| Q |
101 |
gaatcttgatttgacatctacaacatttcatattggcgccttaaagcttgcagcttcaccttctttatcttttcatcaccaccataagcgttcttgata- |
199 |
Q |
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|||||||||| |||||||| | | ||||| ||||| ||||||||||||| |||||||||||| ||||| |||||||||| |||||||||||||| | |
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| T |
44756356 |
gaatcttgatctgacatctgaaggagttcatgctggcgtcttaaagcttgcaacttcaccttcttgatcttctcatcaccacgataagcgttcttgagaa |
44756257 |
T |
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| Q |
200 |
-atatcccaagccctttttgcagattcttgatcaattttcttct-caaaaatattaggatcaatgcactgatgaattagaaacaagccctttgc |
291 |
Q |
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| T |
44756256 |
tatatcccaagcaccctttgcaaattcttgatcaactatcttctaaaaaaatattagggccaatgcactgatgaattaggaacaagccttttgc |
44756163 |
T |
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