View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12812_high_8 (Length: 389)
Name: NF12812_high_8
Description: NF12812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12812_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 49 - 381
Target Start/End: Original strand, 12118547 - 12118879
Alignment:
| Q |
49 |
ttttaggtgatccaagactcgtccaggcgtcccaaccttaaggaataagaagtcatcataaatagaaaaaacaaaatacagacatcaaattgtattaatc |
148 |
Q |
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| T |
12118547 |
ttttaggtgatccaagactcgtccaggcgtcccaaccttcaggaataagaagtcatcataaatagaaaaaacaaaatacagacatcaaattgtattaatc |
12118646 |
T |
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| Q |
149 |
atattttgcatcattcatgtctaaccggtaaaccattaagacatcaaggacaacaaaaatagagtgcacttattcggtaaaacatgggttaaattttcaa |
248 |
Q |
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| T |
12118647 |
atattttgcatcattcatgtctaaccggtaaaccattaagacatcaaggacaacaaaaatagagtgcacttatccggtaaaacatgggttaaattttcaa |
12118746 |
T |
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| Q |
249 |
tcaacacaagacctaccgtgtttttgatatcactcacctataaccttaatgctcttgatgtacaagaagctaatgaaatcaatgcaagcatacggaaaca |
348 |
Q |
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| T |
12118747 |
tcaacacaagatctactgtgtttttgatatcactcacctataaccttaatgctcttgatgtacaagaagctaatgaaatcaatgcaagcatacggaaaca |
12118846 |
T |
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| Q |
349 |
gtaaaacttacaataatatcaggtccctttgct |
381 |
Q |
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| T |
12118847 |
gtaaaacttacaaaaatatcaggtccctttgct |
12118879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 12112552 - 12112585
Alignment:
| Q |
20 |
ttaacttatttcaaaagtttattttggtctttta |
53 |
Q |
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| T |
12112552 |
ttaacttatttcaaaagtttattttagtctttta |
12112585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 11924718 - 11924680
Alignment:
| Q |
49 |
ttttaggtgatccaagactcgtccaggcgtcccaacctt |
87 |
Q |
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| T |
11924718 |
ttttaggtgatccaagagtcgtccaggcgtcccaacctt |
11924680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 30645218 - 30645178
Alignment:
| Q |
49 |
ttttaggtgatccaagactcgtccaggcgtcccaaccttaa |
89 |
Q |
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| T |
30645218 |
ttttaggtgatccaagacacgtccaggagtcccaaccttaa |
30645178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 20523209 - 20523247
Alignment:
| Q |
49 |
ttttaggtgatccaagactcgtccaggcgtcccaacctt |
87 |
Q |
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| T |
20523209 |
ttttaggtgatccaagacacgtccaggagtcccaacctt |
20523247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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