View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12812_low_1 (Length: 644)
Name: NF12812_low_1
Description: NF12812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12812_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 600; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 1 - 632
Target Start/End: Complemental strand, 2985872 - 2985241
Alignment:
| Q |
1 |
aaaagaagacaaatttgtactatagtttgaaagtgactccatgaatgtagggacactcataacaatgttttgaccttagcatccctaagatcaaccaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2985872 |
aaaagaagacaaatttgtactatagtttgaaagtgactccatgaatgtagggacactcataacaatgttttgaccttagcatccctaagattaaccaatt |
2985773 |
T |
|
| Q |
101 |
ttgcatgtcatgcccttggaagccagccatccttacacaatgatagtacatacattatagagtgcacatttttatagcatgaaagcttgttctcattttc |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
2985772 |
ttgcatgccatgcccttggaagccagccatccttacacaatgatagtacatacattatagagtgcacatttctatagcatcaaagcttgttctcattttc |
2985673 |
T |
|
| Q |
201 |
attttagaaagattgagcttactcaatgtaaaagaaacaaaatattaaccagaaaagaaacaattcaatcttatcaagaaacctaaactagaaatatatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2985672 |
attttagaaagattgagcttactcaatgtaaaagaaacaaaatattaaacagaaaagaaacaatgcaatcttatcaagaaacctaaactagaaatatatt |
2985573 |
T |
|
| Q |
301 |
ttacaactatctattaagatcttgacaagcaatgtctaatttagcaatgctagtaaagaatttaactactactacatacaatacaagcttaaaagctaaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2985572 |
ttacaactatctattaagatcttgacaagcaatgtctaatttagcaatgctagtaaagaatttaactactactacatacaatacaagcttaaaagctaat |
2985473 |
T |
|
| Q |
401 |
taaaaactatgatataaagactaacatacattatggttcatactcttcaacctagactcactgaacatcgaaaattcttcagaatggtaaactcttagaa |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2985472 |
taaaaactatgatataaagactaacatacattatggttcatactcttcaacctagactcactgcacatcgaaaattcttcagaatggtaaactcttagaa |
2985373 |
T |
|
| Q |
501 |
gttgaacttgaagtgagtgacttaaaatgatctgatgggactatatcttgaggcaagttggccctcttcacaattttcctcatgttgttttgcaaactta |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2985372 |
gttgaacttgaagtgagtgacttaaaatgatctgatgggactatatcttgaggcaagttggccctcttcacaattttcctcatgttgttttgcaaactta |
2985273 |
T |
|
| Q |
601 |
attggactaattgcttcactgctttcttctct |
632 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
2985272 |
attggactaattgcttcactgctttcttctct |
2985241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 492 - 628
Target Start/End: Original strand, 48998283 - 48998419
Alignment:
| Q |
492 |
ctcttagaagttgaacttgaagtgagtgacttaaaatgatctgatgggactatatcttgaggcaagttggccctcttcacaattttcctcatgttgtttt |
591 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||| | || || || || | ||||||| ||||||| |||||||| ||||||||| |||||||||| | |
|
|
| T |
48998283 |
ctcttagatgttgaacttgaagtgagtgaagcaaaacgctcagaaggaacaaaatcttgacgcaagttagccctcttgacaattttcatcatgttgttct |
48998382 |
T |
|
| Q |
592 |
gcaaacttaattggactaattgcttcactgctttctt |
628 |
Q |
| |
|
|||| || || ||||||||||||||||||||||| |
|
|
| T |
48998383 |
gcaagctctgctgaactaattgcttcactgctttctt |
48998419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University