View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12812_low_11 (Length: 384)
Name: NF12812_low_11
Description: NF12812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12812_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 9 - 367
Target Start/End: Complemental strand, 30484349 - 30483994
Alignment:
| Q |
9 |
gagagagaagaaccatatacataatatgtacacatcatcatactttttataacaagaccatgctattattatcaacctcgaatctcattccttccatgtc |
108 |
Q |
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| T |
30484349 |
gagagataagaaccatatacataatatgtacacatcatcatactttttataacaagaccatgctattattatcaacctggaatctcattccttccatgtc |
30484250 |
T |
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| Q |
109 |
tgatgaggccacaccatcatgatgatcttccaaatccatgtcccacaaatatccatatccatcatcacatttaggactaatttgagtaacactactacaa |
208 |
Q |
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| T |
30484249 |
tgatgaggccacaccatcatgatgatcttccaaatccatgtcccacaaatatccatatccatcatcacatttaggactaatttgagtaacactactacaa |
30484150 |
T |
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| Q |
209 |
ttgttgtttgtttctttagaaaattgaagaagattcatcaaagaattattttggttctcatttaaatgacaatgatgggtggttgtcattgaagatgaga |
308 |
Q |
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| T |
30484149 |
ttgttgtttgtttctttagaaaattgaagaagattcatcaaagaattattttggttctcatttaaatgacaatgatg---ggttgtcattgaagatgaga |
30484053 |
T |
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| Q |
309 |
aagaagcaaattggttatacccaattggcatggtttggttggttagggatgggactata |
367 |
Q |
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| T |
30484052 |
atgaagcaaattggttatacccaattggcatggtttggttggttagggatgggactata |
30483994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 39014840 - 39014904
Alignment:
| Q |
134 |
tcttccaaatccatgtcccacaaatatccatatccatcatcacatttaggactaatttgagtaac |
198 |
Q |
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| T |
39014840 |
tcttccaaatccatgttccacaagaatccatatccatcatcacctttggaactaatttgagtaac |
39014904 |
T |
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