View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12812_low_15 (Length: 292)
Name: NF12812_low_15
Description: NF12812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12812_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 73 - 276
Target Start/End: Original strand, 43194670 - 43194873
Alignment:
| Q |
73 |
gcttacagtaacaggtctctcaggcaacttcacacaaaacgaacagttaagactcccatcaaagatatcaagaacaccacttctcctaacatgaacctca |
172 |
Q |
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| T |
43194670 |
gcttacagtaacaggtctctcaggcaacttcacacaaaacgaacagttaagactcccatcaaagatatcaagaacaccacttctcctaacatgaacctca |
43194769 |
T |
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| Q |
173 |
tccttctctttcaaagatccaccatgtaactcttggcgtttctttctcttctcttcctccgtcaacgaaggatcattctcgatagcgcgaatagcagaga |
272 |
Q |
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| T |
43194770 |
tccttctctttcaaagatccaccatgtaactcttggcgtttctttctcttctcttcctccgtcaacgaaggatcattctcgatagcgcgaatagcagaga |
43194869 |
T |
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| Q |
273 |
caag |
276 |
Q |
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|||| |
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| T |
43194870 |
caag |
43194873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 43193844 - 43193777
Alignment:
| Q |
77 |
acagtaacaggtctctcaggcaacttcacacaaaacgaacagttaagactcccatcaaagatatcaag |
144 |
Q |
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| T |
43193844 |
acagtaacaggtctctcaggcaactggatgcagaaggaacagttaaggctaccatcgaagatatcaag |
43193777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 151
Target Start/End: Complemental strand, 19105426 - 19105349
Alignment:
| Q |
74 |
cttacagtaacaggtctctcaggcaacttcacacaaaacgaacagttaagactcccatcaaagatatcaagaacacca |
151 |
Q |
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|||||||||| ||||||||||| |||| | |||||| ||||| |||||||| |||||||| | |||||| |||||| |
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| T |
19105426 |
cttacagtaatgggtctctcaggtaactgtatacaaaaagaacaattaagactaccatcaaacacatcaagcacacca |
19105349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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