View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12812_low_17 (Length: 252)
Name: NF12812_low_17
Description: NF12812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12812_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 30464739 - 30464975
Alignment:
| Q |
16 |
tagagtagtgctaggtggtgcgaatgatttttcgcggaaacggcacgaccgtgtgattga-------atgcacaatccaac----acttgtgtgctaaaa |
104 |
Q |
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| T |
30464739 |
tagagcagtgctagacggtgcgaattgtttttcgcgtaaaaggcacgaccgtgtaattgattattgaatgcataatccaaccaacacgtgtgtgttaaag |
30464838 |
T |
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| Q |
105 |
cattcttgattaaaaaattatattcaaaaccgccaaaaatatttttcatgcttgttgcatcttatctcttcgttgacttcatattcaaagtaaaaccaaa |
204 |
Q |
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| T |
30464839 |
cattcttgattaaaaaattatattcaaaaccgtcaaaaaaaaatttcacgcttgttgcatcttatcttttgctcgacagcatattcaaagtaaaaccaaa |
30464938 |
T |
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| Q |
205 |
ccccaattacaattcttaaaccataacaacaattctt |
241 |
Q |
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| T |
30464939 |
ctccaattacaatccttaaaccataagaacaattctt |
30464975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 85 - 241
Target Start/End: Original strand, 5644357 - 5644512
Alignment:
| Q |
85 |
ccaacacttgtgtgctaaaacattcttgattaaaaaattatattcaaaaccgccaaaaatatttttcatgcttgttgcatcttatctcttcgttgacttc |
184 |
Q |
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| T |
5644357 |
ccaacacgtgtgtgttaaagcattcttgattaaaaaattatattcaaaaccgtcaaaaaaaattt-cacgcttgttgcatcttatcttttgcttgacagc |
5644455 |
T |
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| Q |
185 |
atattcaaagtaaaaccaaaccccaattacaattcttaaaccataacaacaattctt |
241 |
Q |
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| T |
5644456 |
atattcaaagtaaaaccaaactccaattacaatccttaaaccataagaacaattctt |
5644512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 91 - 223
Target Start/End: Complemental strand, 51471773 - 51471635
Alignment:
| Q |
91 |
cttgtgtgctaaaacattcttgattaaaaaattatattcaaaaccgccaaaaatatttttcatgcttgttgcatc------ttatctcttcgttgacttc |
184 |
Q |
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| T |
51471773 |
cttgtgtgctaaaatattcttgattaaaaaattatattcaaaaccgtcaaaaatatttttcacgcttgttgcatctttatattgtctcttgcttgactgc |
51471674 |
T |
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| Q |
185 |
atattcaaagtaaaaccaaaccccaattacaattcttaa |
223 |
Q |
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| T |
51471673 |
atattcaaagtaaacccaaactccaattacaattcttaa |
51471635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 51471886 - 51471798
Alignment:
| Q |
14 |
aatagagtagtgctaggtggtgcgaatgattttt-cgcggaaacggcacgaccgtgtgattgaatgcacaatccaacacttgtgtgcta |
101 |
Q |
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| T |
51471886 |
aatagagtagtgctaggtggtgcgaatggttttttcgcgtaaaaggcacgacggcgtaattaaatgcacaatccaacacttgtgtgcta |
51471798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 48660931 - 48660852
Alignment:
| Q |
22 |
agtgctaggtggtgcgaatgatttttcgcggaaacggcacgaccgtgtgattgaatgcacaatccaacacttgtgtgcta |
101 |
Q |
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| T |
48660931 |
agtgctagacggtgcgaatggtttttcccgtaaaacacacgaccgtgtaattgaatggacaatccaacactcttgtgcta |
48660852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 30851228 - 30851455
Alignment:
| Q |
22 |
agtgctaggtggtgcgaatgatttttcgcggaaacggcacgaccgtgtgattga-------atgcacaatccaac--acttgtgtgctaaaacattcttg |
112 |
Q |
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| T |
30851228 |
agtgctagacggtgcgaattgtttttcgcgtaaaaggcacgaccgtgtaattgattattgaatgcataatccaaccaacacgtgtgttaaagcattcttg |
30851327 |
T |
|
| Q |
113 |
attaaaaaattatattcaaaaccgccaaaaatatttttcatgcttgttgcatcttatctcttcgttgacttcatattcaaagtaaaaccaaaccccaatt |
212 |
Q |
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| T |
30851328 |
attaaaaaattatgttcaaaaccgtcaaaaaaaattt-cgcgcttgttgcattttatcttttgcttgacagcatattcaaagtaaaaccaaactccaatt |
30851426 |
T |
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| Q |
213 |
acaattcttaaaccataacaacaattctt |
241 |
Q |
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| T |
30851427 |
acaatccttaaaccataagaacaattctt |
30851455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 41617236 - 41617291
Alignment:
| Q |
71 |
attgaatgcacaatccaacacttgtgtgctaaaacattcttgattaaaaaattata |
126 |
Q |
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| T |
41617236 |
attgaatgcataatccaacacttgtgtgctaaagcattcttgattaaaaaattata |
41617291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 37686846 - 37686934
Alignment:
| Q |
13 |
aaatagagtagtgctaggtggtgcgaatgatttttcgcggaaacggcacgaccgtgtgattgaatgcacaatccaacacttgtgtgcta |
101 |
Q |
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| T |
37686846 |
aaatagagcagtgctaaatgatgcgattggtttttcgtgtaaaacacacgaccgtgttattgaatatgcaatccaacacttgtgtgcta |
37686934 |
T |
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