View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12812_low_19 (Length: 245)
Name: NF12812_low_19
Description: NF12812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12812_low_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 15 - 148
Target Start/End: Original strand, 9436959 - 9437092
Alignment:
| Q |
15 |
catcaccaccgagaaagggtgttgtacaacccatatccaccaccgaaccaccgccaccttggaactacaccaaaggccgtcggcggtctatgaccaccca |
114 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9436959 |
catcaccaccgagaaagggtgttgtgcaacccatatccaccaccaaaccaccgccaccttggaactacaccaaaggccgtcggcggtctacgaccaccca |
9437058 |
T |
|
| Q |
115 |
aaaccaaactcacacaaaggatttacagatctgc |
148 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
9437059 |
aaaccaaactcacacaaaggatttacatatctgc |
9437092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 15118366 - 15118245
Alignment:
| Q |
15 |
catcaccaccgagaaagggtgttgtacaacccatatccaccaccgaaccaccgccaccttggaactacaccaaaggccgtcggcggtctatgaccaccca |
114 |
Q |
| |
|
|||||| ||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||| | | |||||||| ||||||||| |
|
|
| T |
15118366 |
catcactaccgagaaatggtgttgcgcaacccatatccaccaccaaaccaccgccaccttggaattacaccaaaggctgccagcggtctacgaccaccca |
15118267 |
T |
|
| Q |
115 |
aaaccaaactcacacaaaggat |
136 |
Q |
| |
|
||||||||| | |||| ||||| |
|
|
| T |
15118266 |
aaaccaaacactcacagaggat |
15118245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 5051932 - 5052030
Alignment:
| Q |
15 |
catcaccaccgagaaagggtgttgtacaacccatatccaccaccgaaccaccgccaccttggaactacaccaaaggccgtcggcggtctatgaccaccc |
113 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||| ||||||||||| ||||||| || ||||||||||| ||||||||| |||||||| |
|
|
| T |
5051932 |
catcaccaccgagaaagggtgttgcgcaacccatatcaaccaccaaaccaccgccatcttggaattataccaaaggccgctggcggtctacgaccaccc |
5052030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 50590200 - 50590263
Alignment:
| Q |
60 |
aaccaccgccaccttggaactacaccaaaggccgtcggcggtctatgaccacccaaaaccaaac |
123 |
Q |
| |
|
|||| |||| ||||||||| |||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
50590200 |
aaccgccgctaccttggaattacaccaaaggccgccggcggtctacgaccacccaaaaccaaac |
50590263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University