View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12812_low_2 (Length: 575)
Name: NF12812_low_2
Description: NF12812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12812_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 290 - 569
Target Start/End: Original strand, 41705737 - 41706016
Alignment:
| Q |
290 |
ttcactgtccaccattctactacgcttacggcgatggaagcttaatagcttctctctatcgcgatacactttctctttctactcttcaacttacaaaatt |
389 |
Q |
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| T |
41705737 |
ttcactgtccaccattctactacgcttacggcgatggaagcttaatagcttctctctatcgcgatacactttctctttctactcttcaacttacaaactt |
41705836 |
T |
|
| Q |
390 |
cacattcggttgtgctcatacaactttctccgaacccaccggagtcgctggcttcggtcgtggattactttctctcccagctcagttagctactcactct |
489 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41705837 |
cacattcggttgtgctcatacaactttctccgaacccaccggagtcgctggcttcggtcgtggattactttctctcccagctcagttagctactcactct |
41705936 |
T |
|
| Q |
490 |
cctcaacttggaaaccgtttttcttattgtttggtttctcattcttttcgttctgaacgaattcgaaaaccaagtccact |
569 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41705937 |
cctcaacttggaaaccgtttttcttattgtttggtttctcattcttttcgttctgaacgaattcgaaaaccaagtccact |
41706016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 7278847 - 7279113
Alignment:
| Q |
18 |
cccacctcttccttctccaaacaattctcttcaacctcaacacacttaccttcaccgccttcaacttcctctgtgggacccaccatttgaatttgatcaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7278847 |
cccacctcttccttctccaaacaattctcttcaacctcaacacacttaccttcaccgccttcaacttcctctgtgggacccaccatttgaatttgatcaa |
7278946 |
T |
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| Q |
118 |
caaattcttgcagaactatagcccttttgataatcgactttctcaagtccctaagagcagaacaatggaagactctaacagaatccaacctaagaagcaa |
217 |
Q |
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| T |
7278947 |
caaattcttgaagaacaatagcccttttgataatcgactttctcaagtccctaagagcagaacaatgaaatactctaacagaatccaacctaagaagcaa |
7279046 |
T |
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| Q |
218 |
attcatgattgtttcagcgatccttatcctctctttttgctcatttttcatcatcttcacaggttct |
284 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
7279047 |
attcataattgtttcagcgatccttatcctctctttttgctcctttttcatcatcttcacagtttct |
7279113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 7374992 - 7374726
Alignment:
| Q |
18 |
cccacctcttccttctccaaacaattctcttcaacctcaacacacttaccttcaccgccttcaacttcctctgtgggacccaccatttgaatttgatcaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7374992 |
cccacctcttccttctccaaacaattctcttcaacctcaacacacttaccttcaccgccttcaacttcctctgtgggacccaccatttgaatttgatcaa |
7374893 |
T |
|
| Q |
118 |
caaattcttgcagaactatagcccttttgataatcgactttctcaagtccctaagagcagaacaatggaagactctaacagaatccaacctaagaagcaa |
217 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
7374892 |
caaattcttgaagaacaatagcccttttgataatcgactttctcaagtccctaagagcagaacaatgaaatactctaacagaatccaacctaagaagcaa |
7374793 |
T |
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| Q |
218 |
attcatgattgtttcagcgatccttatcctctctttttgctcatttttcatcatcttcacaggttct |
284 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
7374792 |
attcataattgtttcagcgatccttatcctctctttttgctcctttttcatcatcttcacagtttct |
7374726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 193 - 284
Target Start/End: Complemental strand, 5848215 - 5848125
Alignment:
| Q |
193 |
taacagaatccaacctaagaagcaaattcatgattgtttcagcgatccttatcctctctttttgctcatttttcatcatcttcacaggttct |
284 |
Q |
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|||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
5848215 |
taacagaatccaacctaagaagcaaattcatgatggttttagtgatccttatcctctctttttgctc-cttttcatcatcttcacagtttct |
5848125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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