View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12812_low_20 (Length: 240)
Name: NF12812_low_20
Description: NF12812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12812_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 45380402 - 45380613
Alignment:
| Q |
14 |
agactatgtcaaggaatggattgggagtcagatttgtccatcaaatgctgattgggatgatgatattggcagtgctaagatcaataacattcaggagaaa |
113 |
Q |
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| T |
45380402 |
agactatgtcaaggaatggattgggagtcaaatttgtccatcaaatgctgattgggatgatggtattggcagtgctaagatcaacaacattcaggagaag |
45380501 |
T |
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| Q |
114 |
tctgagttggaaaattcaagtccaactgataaagccagtgatgcaaatggaccacaattactacaagtatctgtgatggaaaatgcagataataaagttg |
213 |
Q |
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| T |
45380502 |
tcagagttggaaaattcaagtccaattgataaagccagtgatgcaaatggaacacaattactacaagtatctgtgatggaaaatgcagataataaagttg |
45380601 |
T |
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| Q |
214 |
ttgatatgaaag |
225 |
Q |
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| T |
45380602 |
ttgatatgaaag |
45380613 |
T |
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