View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12812_low_21 (Length: 239)
Name: NF12812_low_21
Description: NF12812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12812_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 35490496 - 35490713
Alignment:
| Q |
1 |
tggccggaaaacacgggcagttgtggggtaagagttttggtcaaatttcaaatata--gtgacnnnnnnntccttcgggacaatctcgtgattttgattt |
98 |
Q |
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| T |
35490496 |
tggccggaaaacatgggcagttgtggggtaagagttttggtcaaatttcaaatatatagtgacaaaaaaatccttccggacaatctcgtgattttgattt |
35490595 |
T |
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| Q |
99 |
cgttgtattgatgatttccatttaaaaatatagtgatggaacctctttgagttggccttgtggtgttggtttaggatattagagaatatcaaagtatgag |
198 |
Q |
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| T |
35490596 |
cgttgtattaatcatttccatttaaaaatatagtaatggaacctctttgagt--------tggtcttggtttgggatattagagaatatcaaaatatgag |
35490687 |
T |
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| Q |
199 |
attcgattcttcgagtggtgcaaatt |
224 |
Q |
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|||||||||||||||||||||||||| |
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| T |
35490688 |
attcgattcttcgagtggtgcaaatt |
35490713 |
T |
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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 7417821 - 7417766
Alignment:
| Q |
1 |
tggccggaaaacacgggcagttgtggggtaagagttttggtcaaatttcaaatata |
56 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7417821 |
tggccggaaaacatgggcagttgtggggtaaaagttttggtcaaatttcaaatata |
7417766 |
T |
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