View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12812_low_22 (Length: 236)
Name: NF12812_low_22
Description: NF12812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12812_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 12819023 - 12818953
Alignment:
| Q |
151 |
cataattttcacctataaaaacgcaccatagacatggtttacagtatctatcaaaatctatgagagaagat |
221 |
Q |
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| T |
12819023 |
cataattttcacctataaaaacgcaccatagacatggtttacagtatctatcaaaatctatgagagaagat |
12818953 |
T |
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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 12819173 - 12819111
Alignment:
| Q |
1 |
aaaaaactgttgtcatttaccatataattttttattcaaaaatatggaacttattataattcc |
63 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
12819173 |
aaaaaactgttgtcatttaccatataattttttattcaaaaatatgaaacttattataattcc |
12819111 |
T |
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